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See other SCG5 CNV Assays ›
Gene Symbol
SCG5
Assay Reference Genome
Location

Chr.15:32649530 on build GRCh38
Cytoband
15q13.3
Assay ID Hs03899401_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 6447

Gene Name:

 secretogranin V

Gene Aliases:

 7B2, P7B2, SGNE1, SgV

Location:

 Chr.15:32641669-32697097 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCG5 NM_001144757.1 NP_001138229.1
NM_003020.3 NP_003011.1
AK314965.1
BC005349.1 AAH05349.1
BC093053.1 AAH93053.1
BP377248.1
CR541824.1 CAG46623.1
Y00757.1 CAA68726.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv517740 Chr.15:31727863 - 32666510 on Build GRCh38 Gain+Loss SCG5 GOLGA8O LOC105370940 ULK4P1 LOC101060588 GOLGA8N WHAMMP1 GOLGA8K LOC100653133 ARHGAP11A LOC100996255 LOC101928042 CHRNA7 LOC105370757
nsv568913 Chr.15:32633875 - 33060788 on Build GRCh38 Gain LOC100131315 FMN1 SCG5 GREM1 ARHGAP11A LOC105370757
nsv428302 Chr.15:31646275 - 32694378 on Build GRCh38 Gain+Loss OTUD7A SCG5 GOLGA8O LOC105370940 ULK4P1 LOC101060588 GOLGA8N WHAMMP1 GOLGA8K LOC100653133 ARHGAP11A LOC100996255 LOC101928042 CHRNA7 LOC105370757
esv2760023 Chr.15:31474097 - 32694378 on Build GRCh38 Gain+Loss OTUD7A SCG5 GOLGA8O LOC105370940 ULK4P1 LOC101060588 GOLGA8N WHAMMP1 GOLGA8K LOC100653133 ARHGAP11A LOC100996255 LOC101928042 CHRNA7 LOC105370757
nsv1052620 Chr.15:32612402 - 34538731 on Build GRCh38 Gain LOC101928134 FMN1 SCG5 GREM1 MIR1233-1 CHRM5 MIR1233-2 EMC7 GOLGA8B RYR3 TMCO5B EMC4 PGBD4 LOC100131315 NOP10 GOLGA8A ARHGAP11A SLC12A6 LOC101928042 NUTM1 LPCAT4 LOC105370757 AVEN KATNBL1
nsv483039 Chr.15:32574635 - 32751321 on Build GRCh38 Gain LOC100131315 SCG5 GREM1 ARHGAP11A LOC100996255 LOC101928042 GOLGA8N LOC105370757
esv33337 Chr.15:31689863 - 34575097 on Build GRCh38 Gain+Loss SCG5 GOLGA8O GREM1 MIR1233-1 LOC105370940 EMC7 GOLGA8B TMCO5B GOLGA8N WHAMMP1 PGBD4 LOC100131315 GOLGA8K LOC100653133 NOP10 GOLGA8A ARHGAP11A SLC12A6 LOC101928042 CHRNA7 LPCAT4 LOC105370757 AVEN LOC101928134 FMN1 CHRM5 MIR1233-2 ULK4P1 LOC101060588 RYR3 EMC4 LOC100996255 NUTM1 KATNBL1
esv3892661 Chr.15:32393132 - 32776080 on Build GRCh38 Gain FMN1 SCG5 GOLGA8O GREM1 ULK4P1 LOC101060588 GOLGA8N WHAMMP1 LOC100131315 GOLGA8K LOC100653133 ARHGAP11A LOC100996255 LOC101928042 LOC105370757
nsv469587 Chr.15:32529739 - 32694378 on Build GRCh38 Loss SCG5 ARHGAP11A LOC100996255 LOC101928042 GOLGA8N LOC105370757 WHAMMP1
esv2422296 Chr.15:32506737 - 32929014 on Build GRCh38 Duplication LOC100131315 FMN1 SCG5 GREM1 ARHGAP11A LOC100996255 LOC101928042 GOLGA8N LOC105370757 WHAMMP1
dgv4456n54 Chr.15:32604149 - 34557061 on Build GRCh38 Gain SCG5 GREM1 MIR1233-1 EMC7 GOLGA8B TMCO5B GOLGA8N PGBD4 LOC100131315 NOP10 GOLGA8A ARHGAP11A SLC12A6 LOC101928042 LPCAT4 LOC105370757 AVEN LOC101928134 FMN1 CHRM5 MIR1233-2 RYR3 EMC4 NUTM1 KATNBL1

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More Information


Additional Information:

For this assay, SNP(s) [rs116648629] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

chaperone

Gene Ontology Categories:

Function(s) Process(es)


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