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See other HAGH CNV Assays ›
Gene Symbol
HAGH
Assay Reference Genome
Location

Chr.16:1826012 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03918002_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 3029

Gene Name:

 hydroxyacylglutathione hydrolase

Gene Aliases:

 GLO2, GLX2, GLXII, HAGH1

Location:

 Chr.16:1809099-1827194 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HAGH NM_001040427.1 NP_001035517.1
NM_001286249.1 NP_001273178.1
NM_005326.4 NP_005317.2
XM_011522469.2 XP_011520771.1
XM_011522470.2 XP_011520772.1
XM_017023195.1 XP_016878684.1
AK290155.1
AK298174.1
AK299173.1
AK299993.1
AK308825.1
BC000840.1 AAH00840.1
BC002627.2
BG703401.1
BI758286.1
BU176541.1
DB502986.1
DR006636.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv517196 Chr.16:1729694 - 1844960 on Build GRCh38 Gain+Loss HAGH IGFALS NUBP2 FAHD1 NME3 EME2 MAPK8IP3 SPSB3 MIR3177 MRPS34 MEIOB
dgv4857n54 Chr.16:1806439 - 1855005 on Build GRCh38 Loss HAGH FAHD1 MEIOB
nsv1070733 Chr.16:1825998 - 1826699 on Build GRCh38 Deletion HAGH
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication EME2 ARHGDIG TPSG1 LINC00235 RPS2 LOC100287175 CRAMP1 BRICD5 ATP6V0C WASIR2 ABCA17P LOC105371038 LOC105371049 RAB26 NHLRC4 MIR6511B1 STUB1 TMEM8A WDR24 LOC729652 SNORD60 MIR940 LOC652276 MIR3677 TBC1D24 MRPS34 CCDC78 NPRL3 SNRNP25 MRPL28 CACNA1H MIR3176 TSC2 SLC9A3R2 LOC100134368 MIR3177 RHOT2 LOC105371046 AMDHD2 RAB40C HS3ST6 UBE2I MIR3178 SNORA78 NUBP2 LINC00254 ABCA3 RNPS1 MLST8 PRR25 FAM173A CCDC154 DECR2 TSR3 RHBDL1 MSLN SNORA64 LOC105371184 LOC106660606 LUC7L C16orf59 RHBDF1 HBA2 GFER CLCN7 MIR1225 LOC107984876 WFIKKN1 RGS11 PKD1 DNASE1L2 LOC107987233 METTL26 NOXO1 LOC105371047 PGP TPSD1 SNHG9 TRAF7 FAM234A JMJD8 ZNF598 HBZ ECI1 MCRIP2 MSRB1 RNF151 NARFL LOC101929280 CAPN15 POLR3K METRN E4F1 MEIOB SNORA10 NME3 SOX8 MIR6767 MAPK8IP3 CHTF18 MIR3180-5 ERVK13-1 MIR4516 WDR90 NDUFB10 PIGQ MIR4717 PRSS29P C16orf91 HN1L PTX4 TPSAB1 BAIAP3 NPW TELO2 MIR6768 HBA1 PDIA2 NME4 MIR662 RAB11FIP3 TBL3 CCNF FBXL16 LMF1 KCTD5 SNHG19 C1QTNF8 AXIN1 UNKL PRR35 HAGH MPG RPL23AP5 RPL3L SYNGR3 TPSB2 MIR5587 CEMP1 LMF1-AS1 HBM NTN3 FAHD1 GNPTG IFT140 SSTR5-AS1 GNG13 MIR6859-4 DDX11L10 IGFALS TMEM204 FLJ42627 SPSB3 CASKIN1 HAGHL PDPK1 RPUSD1 LOC105371045 NTHL1 SSTR5 HBQ1 PRSS27
nsv1040440 Chr.16:1811739 - 1866102 on Build GRCh38 Gain HAGH FAHD1 MEIOB
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss NUBP2 FAHD1 EME2 IFT140 MRPS34 HN1L CRAMP1 MEIOB HAGH IGFALS TELO2 NME3 LOC105371047 TMEM204 MAPK8IP3 SPSB3 MIR3177 LOC105371046
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss NUBP2 FAHD1 EME2 MRPS34 HN1L CRAMP1 MEIOB HAGH IGFALS NME3 MAPK8IP3 SPSB3 MIR3177
nsv1042986 Chr.16:1784723 - 1866102 on Build GRCh38 Loss HAGH IGFALS NUBP2 FAHD1 MEIOB
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion HAGH IGFALS NUBP2 FAHD1 NME3 EME2 MAPK8IP3 SPSB3 MIR3177 MRPS34
nsv457337 Chr.16:1813519 - 1855005 on Build GRCh38 Loss HAGH FAHD1 MEIOB
dgv335n27 Chr.16:1817039 - 1897015 on Build GRCh38 Gain HAGH FAHD1 LINC00254 MEIOB

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More Information


Additional Information:

For this assay, SNP(s) [rs75475326] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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