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See other HAGH CNV Assays ›
Gene Symbol
HAGH
Assay Reference Genome
Location

Chr.16:1826012 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03918002_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 3029

Gene Name:

 hydroxyacylglutathione hydrolase

Gene Aliases:

 GLO2, GLX2, GLXII, HAGH1

Location:

 Chr.16:1809099-1827194 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HAGH NM_001040427.1 NP_001035517.1
NM_001286249.1 NP_001273178.1
NM_005326.4 NP_005317.2
XM_011522469.2 XP_011520771.1
XM_011522470.2 XP_011520772.1
XM_017023195.1 XP_016878684.1
AK290155.1
AK298174.1
AK299173.1
AK299993.1
AK308825.1
BC000840.1 AAH00840.1
BC002627.2
BG703401.1
BI758286.1
BU176541.1
DB502986.1
DR006636.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv517196 Chr.16:1729694 - 1844960 on Build GRCh38 Gain+Loss MAPK8IP3 MIR3177 MEIOB EME2 FAHD1 HAGH MRPS34 IGFALS SPSB3 NME3 NUBP2
nsv1070733 Chr.16:1825998 - 1826699 on Build GRCh38 Deletion HAGH
nsv571175 Chr.16:1806439 - 1875278 on Build GRCh38 Loss MEIOB FAHD1 HAGH
nsv1040440 Chr.16:1811739 - 1866102 on Build GRCh38 Gain MEIOB FAHD1 HAGH
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR662 PRR25 KCTD5 HBA2 TPSB2 RAB11FIP3 CCNF MRPS34 LOC105371045 SNORD60 MIR5587 RHBDL1 LOC106660606 STUB1 CACNA1H LOC105371184 ABCA17P NTHL1 CLCN7 HAGHL TPSG1 CCDC154 SYNGR3 RNPS1 MIR6859-4 PRSS29P ERVK13-1 GNPTG TMEM8A E4F1 UBE2I PRR35 SSTR5 MIR6767 UNKL TSC2 RPL23AP5 RNF151 LOC107984876 WDR24 C16orf59 PDPK1 TRAF7 METRN LOC101929280 CCDC78 HN1L DDX11L10 RAB40C METTL26 CRAMP1 TELO2 HBA1 ARHGDIG AXIN1 LMF1-AS1 SSTR5-AS1 BAIAP3 NME4 RHOT2 MIR3178 BRICD5 RPUSD1 FAM234A GFER DNASE1L2 CAPN15 CEMP1 TPSD1 MIR3176 C16orf91 RGS11 ECI1 SNORA64 TSR3 HBQ1 ATP6V0C LOC105371038 SOX8 PIGQ PRSS27 FAHD1 LOC105371046 LOC100287175 PTX4 NPW MSRB1 MIR6511B1 NME3 NUBP2 IFT140 LOC729652 SNHG9 LINC00235 RPS2 SNRNP25 POLR3K MIR4516 MIR3177 HBM ZNF598 LUC7L RHBDF1 CASKIN1 MPG FBXL16 MIR940 MAPK8IP3 NARFL MIR3180-5 WFIKKN1 RAB26 PDIA2 LOC105371049 MLST8 CHTF18 LINC00254 RPL3L MRPL28 WASIR2 WDR90 C1QTNF8 MEIOB GNG13 HBZ ABCA3 NHLRC4 SLC9A3R2 TPSAB1 LOC107987233 SPSB3 PGP MCRIP2 SNORA78 MSLN MIR3677 HAGH MIR1225 JMJD8 MIR4717 SNHG19 LOC105371047 EME2 FAM173A NPRL3 LMF1 NOXO1 LOC100134368 TBC1D24 SNORA10 PKD1 DECR2 MIR6768 LOC652276 NDUFB10 HS3ST6 AMDHD2 TBL3 IGFALS TMEM204 FLJ42627 NTN3
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss MAPK8IP3 LOC105371047 MEIOB EME2 MRPS34 SPSB3 MIR3177 HN1L FAHD1 HAGH LOC105371046 IGFALS TMEM204 NME3 NUBP2 IFT140 CRAMP1 TELO2
nsv1042986 Chr.16:1784723 - 1866102 on Build GRCh38 Loss MEIOB FAHD1 HAGH IGFALS NUBP2
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss MAPK8IP3 MEIOB EME2 MRPS34 SPSB3 MIR3177 HN1L FAHD1 HAGH IGFALS NME3 NUBP2 CRAMP1
nsv457337 Chr.16:1813519 - 1855005 on Build GRCh38 Loss MEIOB FAHD1 HAGH
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion MAPK8IP3 MIR3177 EME2 FAHD1 HAGH MRPS34 IGFALS SPSB3 NME3 NUBP2
nsv571177 Chr.16:1817039 - 1897015 on Build GRCh38 Gain LINC00254 MEIOB FAHD1 HAGH

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More Information


Additional Information:

For this assay, SNP(s) [rs75475326] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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