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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2587814 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03918105_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC100287175 RAB40C NUBP2 TPSAB1 LOC107987233 RPUSD1 FBXL16 PTX4 GNPTG LOC106660606 TPSD1 TELO2 PKD1 CCNF TBL3 HBA1 SNORA10 CACNA1H EME2 LOC729652 MAPK8IP3 SOX8 SNORA64 C16orf91 SNORA78 ERVK13-1 RGS11 DNASE1L2 KCTD5 SNHG9 MIR4717 PDPK1 MIR3176 MSLN WASIR2 NTHL1 FAM234A PIGQ LOC105371045 PRSS29P WDR90 CHTF18 SYNGR3 MCRIP2 JMJD8 CEMP1 MLST8 C1QTNF8 TMEM204 TPSB2 SSTR5-AS1 MRPL28 ATP6V0C HBZ ABCA3 HN1L PRR25 TRAF7 DECR2 FAHD1 IFT140 PDIA2 CCDC78 NARFL BRICD5 IGFALS HS3ST6 UNKL LMF1-AS1 SPSB3 SNORD60 RPL3L MIR6859-4 MIR662 TBC1D24 POLR3K LOC101929280 TSC2 CLCN7 TMEM8A RAB26 RHOT2 GFER NPW NPRL3 MIR4516 MIR1225 MEIOB RHBDL1 ECI1 ARHGDIG ABCA17P UBE2I MSRB1 NDUFB10 LOC652276 SNRNP25 MIR3178 MIR940 LOC107984876 MIR6767 C16orf59 NTN3 E4F1 DDX11L10 MPG LMF1 SSTR5 AXIN1 HBA2 WDR24 FAM173A MIR3677 HBM MIR6511B1 HAGH LOC105371047 SNHG19 RPL23AP5 RHBDF1 METTL26 AMDHD2 WFIKKN1 LINC00235 MIR5587 ZNF598 NOXO1 STUB1 SLC9A3R2 MIR3177 CRAMP1 RPS2 LOC105371046 PGP MIR3180-5 TSR3 CCDC154 FLJ42627 TPSG1 CAPN15 GNG13 LOC100134368 RAB11FIP3 BAIAP3 LOC105371038 LINC00254 NHLRC4 RNF151 HAGHL MRPS34 CASKIN1 RNPS1 PRR35 HBQ1 LUC7L NME3 PRSS27 LOC105371049 NME4 METRN LOC105371184 MIR6768
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss LOC652276 MIR3178 ERVK13-1 AMDHD2 SRRM2-AS1 PRSS33 PRSS21 TCEB2 KCTD5 CEMP1 PRSS41 SRRM2 PDPK1 ATP6V0C PRSS27 TBC1D24 FLJ42627
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss LOC652276 CEMP1 MIR3178 ERVK13-1 PDPK1 AMDHD2 ATP6V0C TBC1D24 FLJ42627
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6511B1 TSC2 SNHG19 AMDHD2 RAB26 LOC106660606 MIR4516 CEMP1 MLST8 MIR1225 PKD1 CCNF PGP ECI1 MIR3180-5 ATP6V0C ABCA17P LOC729652 ABCA3 LOC652276 MIR3178 MIR940 MIR6767 TRAF7 C16orf59 NTN3 E4F1 DNASE1L2 BRICD5 MIR4717 CASKIN1 RNPS1 PDPK1 LOC105371049 MIR3677 SNORD60 TBC1D24 MIR6768
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss LOC652276 SRRM2 ERVK13-1 PDPK1 SRRM2-AS1 PRSS27 KCTD5 FLJ42627

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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