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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2587814 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03918105_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBM MIR3677 SLC9A3R2 TPSG1 POLR3K SNHG19 ABCA17P NPRL3 KCTD5 MIR662 MIR6767 EME2 LOC106660606 NHLRC4 NTHL1 SNORA64 C1QTNF8 ATP6V0C METRN HAGHL RHBDL1 NUBP2 FAM234A LOC100287175 PKD1 MRPL28 ECI1 METTL26 SSTR5 GNG13 IFT140 DDX11L10 MIR1225 MIR940 AMDHD2 LINC00254 SNRNP25 CEMP1 MIR3178 TMEM204 PTX4 FAHD1 FAM173A SNORA10 AXIN1 MSRB1 JMJD8 MIR6859-4 MIR4717 TPSD1 RPUSD1 PRR25 NPW RPL3L STUB1 CCDC78 ABCA3 PRSS29P LOC105371047 DECR2 SNORD60 C16orf91 ARHGDIG MIR3180-5 TPSAB1 MSLN RAB11FIP3 CLCN7 PDPK1 SNORA78 MIR6511B1 MRPS34 CRAMP1 RNF151 CCNF MIR3177 PRR35 HBQ1 CASKIN1 HBZ UNKL HN1L TBC1D24 SPSB3 NDUFB10 PIGQ RNPS1 LOC105371184 NME4 RPS2 ERVK13-1 MIR6768 TELO2 WDR24 SNHG9 MLST8 TBL3 CAPN15 LOC107984876 RAB26 WDR90 NARFL CCDC154 LOC729652 LOC107987233 GFER PRSS27 LOC105371045 BAIAP3 WFIKKN1 HBA1 CHTF18 DNASE1L2 TSR3 E4F1 LOC652276 RPL23AP5 FLJ42627 HBA2 GNPTG LOC105371038 LOC105371049 LOC101929280 SYNGR3 RAB40C SSTR5-AS1 CACNA1H WASIR2 MIR4516 LMF1-AS1 MIR5587 FBXL16 MEIOB LOC105371046 IGFALS MPG LUC7L NME3 MCRIP2 SOX8 HS3ST6 NOXO1 UBE2I RGS11 TMEM8A PDIA2 HAGH RHOT2 MAPK8IP3 ZNF598 LOC100134368 TPSB2 TRAF7 BRICD5 LMF1 C16orf59 LINC00235 MIR3176 NTN3 TSC2 PGP RHBDF1
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss ATP6V0C PRSS21 PRSS41 TBC1D24 PDPK1 KCTD5 PRSS33 SRRM2-AS1 TCEB2 ERVK13-1 PRSS27 SRRM2 AMDHD2 CEMP1 MIR3178 LOC652276 FLJ42627
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ATP6V0C TBC1D24 ERVK13-1 AMDHD2 PDPK1 CEMP1 MIR3178 LOC652276 FLJ42627
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR3677 TBC1D24 MIR4717 LOC105371049 RNPS1 SNHG19 ABCA17P MIR6767 LOC106660606 MIR4516 MIR6768 ABCA3 MLST8 SNORD60 ATP6V0C MIR3180-5 RAB26 PKD1 PDPK1 MIR6511B1 LOC729652 CCNF ECI1 TRAF7 BRICD5 CASKIN1 MIR1225 C16orf59 MIR940 AMDHD2 DNASE1L2 NTN3 TSC2 CEMP1 MIR3178 E4F1 PGP LOC652276
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss SRRM2-AS1 ERVK13-1 PRSS27 SRRM2 PDPK1 LOC652276 KCTD5 FLJ42627

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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