Hs03918512_cn

• Gene Symbol: PABPN1L
• Assay Reference Genome Location: Chr.16:88865599 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 390748
• Gene Name: poly(A) binding protein nuclear 1 like (cytoplasmic)
• Gene Aliases: PABPNL1, ePABP2
• Location: Chr.16:88862623-88870152 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PABPN1L	NM_001080487.2			NP_001073956.2
	NM_001294328.1			NP_001281257.1
	XM_017023230.1			XP_016878719.1
	BC130001.1
	BC130002.1
	EU190484.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	LOC100129697 PIEZO1 GALNS LOC107987238 PABPN1L CBFA2T3 LOC105371409 LOC101927793 CDT1 TRAPPC2L APRT
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC339059 LOC100129697 LOC100289580 LOC400558 PIEZO1 LINC00304 SLC22A31 PABPN1L CBFA2T3 CDT1 ACSF3 CTU2 MIR4722 GALNS LOC107987238 LOC105371409 CDH15 ZNF778 LOC101927793 TRAPPC2L APRT
nsv1928	Chr.16:88865211 - 88897277 on Build GRCh38	Insertion	PABPN1L CBFA2T3 LOC101927793
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	LOC100129697 LOC400558 LINC00304 SLC22A31 PABPN1L CBFA2T3 CDT1 ACSF3 GALNS LOC107987238 LOC105371409 CDH15 LOC101927793 TRAPPC2L APRT
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC339059 LOC100129697 LOC105371414 LOC100289580 LOC400558 PIEZO1 LINC00304 ANKRD11 SLC22A31 PABPN1L CBFA2T3 CDT1 ACSF3 GALNS LOC107987238 LOC105371409 CDH15 ZNF778 LOC101927793 TRAPPC2L APRT LOC100287036
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	PIEZO1 GALNS LOC107987238 PABPN1L CBFA2T3 LOC101927793 CDT1 TRAPPC2L APRT
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	LOC100129697 LOC400558 LINC00304 PABPN1L CBFA2T3 CDT1 ACSF3 GALNS LOC107987238 LOC105371409 CDH15 LOC101927793 TRAPPC2L APRT
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	LOC100129697 GALNS LOC107987238 PABPN1L CBFA2T3 LOC105371409 LOC101927793 CDT1 TRAPPC2L APRT
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC107984817 MC1R ANKRD11 LOC101927817 IL17C GAS8 SNAI3 MVD TUBB8P7 SPATA2L CHMP1A LOC107987238 CPNE7 LOC101927793 LOC100289580 LOC400558 SLC22A31 FANCA CDT1 SNORD68 PRDM7 VPS9D1-AS1 MIR4722 GALNS CDH15 ZNF778 VPS9D1 LOC100287036 LOC339059 LOC100129697 DBNDD1 TUBB3 LOC105371414 DEF8 GAS8-AS1 PABPN1L AFG3L1P ACSF3 TCF25 CYBA DPEP1 APRT URAHP CENPBD1 LOC105371419 PIEZO1 LINC00304 SPG7 SNAI3-AS1 CDK10 CBFA2T3 FAM157C RPL13 CTU2 RNF166 ZNF276 LOC105371409 SPIRE2 TRAPPC2L SPATA33
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	GALNS PABPN1L CBFA2T3 TRAPPC2L
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	LOC339059 LOC100289580 PIEZO1 PABPN1L CBFA2T3 CDT1 CTU2 MIR4722 GALNS LOC107987238 LOC101927793 TRAPPC2L APRT

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

translation initiation factor

Gene Ontology Categories:

Function(s)

nucleotide binding
RNA binding