Hs03918512_cn

• Gene Symbol: PABPN1L
• Assay Reference Genome Location: Chr.16:88865599 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 390748
• Gene Name: poly(A) binding protein nuclear 1 like (cytoplasmic)
• Gene Aliases: PABPNL1, ePABP2
• Location: Chr.16:88862623-88870152 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PABPN1L	NM_001080487.2			NP_001073956.2
	NM_001294328.1			NP_001281257.1
	XM_017023230.1			XP_016878719.1
	BC130001.1
	BC130002.1
	EU190484.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	CBFA2T3 APRT LOC100129697 LOC107987238 PABPN1L LOC105371409 TRAPPC2L GALNS PIEZO1 CDT1 LOC101927793
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CBFA2T3 ACSF3 LOC107987238 CDH15 LOC100289580 PIEZO1 LOC339059 MIR4722 LINC00304 CTU2 SLC22A31 APRT LOC100129697 PABPN1L LOC105371409 TRAPPC2L ZNF778 GALNS LOC400558 CDT1 LOC101927793
nsv1928	Chr.16:88865211 - 88897277 on Build GRCh38	Insertion	CBFA2T3 PABPN1L LOC101927793
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CBFA2T3 ACSF3 LOC107987238 CDH15 LINC00304 SLC22A31 APRT LOC100129697 PABPN1L LOC105371409 TRAPPC2L GALNS LOC400558 CDT1 LOC101927793
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	CBFA2T3 ACSF3 LOC105371414 LOC107987238 CDH15 LOC100289580 PIEZO1 LOC339059 ANKRD11 LINC00304 SLC22A31 APRT LOC100129697 PABPN1L LOC105371409 TRAPPC2L ZNF778 GALNS LOC400558 CDT1 LOC100287036 LOC101927793
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	CBFA2T3 APRT LOC107987238 PABPN1L TRAPPC2L GALNS PIEZO1 CDT1 LOC101927793
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	CBFA2T3 APRT LOC100129697 LOC107987238 PABPN1L LOC105371409 TRAPPC2L GALNS CDT1 LOC101927793
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CBFA2T3 ACSF3 LOC107987238 CDH15 LINC00304 APRT LOC100129697 PABPN1L LOC105371409 TRAPPC2L GALNS LOC400558 CDT1 LOC101927793
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	MVD ACSF3 LOC105371414 SPG7 PIEZO1 CTU2 SLC22A31 CYBA APRT FANCA LOC107984817 GALNS LOC400558 CENPBD1 RPL13 LOC101927793 CBFA2T3 AFG3L1P RNF166 SPIRE2 GAS8-AS1 SNAI3-AS1 SNORD68 CDH15 LOC339059 FAM157C ZNF276 PRDM7 MC1R LOC105371409 TRAPPC2L IL17C VPS9D1-AS1 CDT1 LOC100287036 LOC105371419 CHMP1A DPEP1 TCF25 TUBB3 CDK10 LOC107987238 SNAI3 CPNE7 LOC101927817 LOC100289580 VPS9D1 LINC00304 LOC100129697 PABPN1L GAS8 SPATA33 URAHP ANKRD11 MIR4722 DEF8 SPATA2L TUBB8P7 DBNDD1 ZNF778
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	CBFA2T3 PABPN1L TRAPPC2L GALNS
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	CBFA2T3 LOC107987238 LOC100289580 PIEZO1 LOC339059 MIR4722 CTU2 APRT LOC100129697 PABPN1L LOC105371409 TRAPPC2L GALNS CDT1 LOC101927793

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

translation initiation factor

Gene Ontology Categories:

Function(s)

nucleotide binding
RNA binding