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See other RAB11FIP3 CNV Assays ›
Gene Symbol
RAB11FIP3
Assay Reference Genome
Location

Chr.16:427145 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03919183_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9727

Gene Name:

 RAB11 family interacting protein 3

Gene Aliases:

 CART1, Rab11-FIP3

Location:

 Chr.16:425621-522485 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB11FIP3 NM_014700.3 NP_055515.1
XM_005255713.3 XP_005255770.1
XM_005255717.3 XP_005255774.1
XM_005255718.3 XP_005255775.1
XM_017023907.1 XP_016879396.1
AB014565.1
AF395731.1 AAL12940.1
BC051360.1 AAH51360.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication DECR2 RHBDF1 MPG LMF1-AS1 ECI1 SPSB3 TBC1D24 LOC105371049 METRN MIR662 WDR24 RAB26 RNF151 CCDC154 LOC105371038 HAGH FAHD1 RNPS1 METTL26 LOC105371045 SLC9A3R2 MEIOB TBL3 MSRB1 JMJD8 LOC105371047 NUBP2 KCTD5 LMF1 SNORD60 MLST8 RPS2 GNG13 NTHL1 MSLN WFIKKN1 SNHG19 POLR3K ABCA3 MIR4516 TMEM8A MIR1225 RAB40C FLJ42627 MIR4717 ZNF598 AXIN1 HS3ST6 NME4 HAGHL CRAMP1 SNORA64 ATP6V0C BAIAP3 LINC00254 C16orf91 CAPN15 DNASE1L2 MIR3177 RHBDL1 SNORA10 MRPS34 GNPTG CEMP1 NOXO1 UBE2I MIR3180-5 PRSS27 RPUSD1 GFER TMEM204 LINC00235 CLCN7 HBM PTX4 RGS11 FBXL16 E4F1 LUC7L SSTR5-AS1 NPRL3 RPL3L SYNGR3 LOC652276 WASIR2 WDR90 BRICD5 PRSS29P ABCA17P LOC105371184 EME2 ARHGDIG LOC100287175 LOC105371046 NHLRC4 NARFL AMDHD2 PDIA2 MIR6767 TELO2 MRPL28 C1QTNF8 CCDC78 STUB1 FAM234A C16orf59 MIR3176 NTN3 NDUFB10 TPSD1 HBQ1 LOC100134368 PKD1 TRAF7 PDPK1 CHTF18 UNKL CCNF HBA2 IGFALS ERVK13-1 IFT140 TPSG1 DDX11L10 TPSAB1 MIR6859-4 NPW SSTR5 PGP MIR940 PRR25 RHOT2 LOC101929280 MAPK8IP3 MIR3178 MIR5587 MIR3677 FAM173A MIR6768 LOC106660606 LOC107984876 HBZ CASKIN1 TPSB2 PIGQ SOX8 TSC2 RAB11FIP3 SNHG9 MCRIP2 SNRNP25 TSR3 HN1L MIR6511B1 PRR35 HBA1 CACNA1H RPL23AP5 LOC107987233 SNORA78 NME3 LOC729652
dgv4810n54 Chr.16:380011 - 445662 on Build GRCh38 Loss RPL23AP5 DECR2 RAB11FIP3 NME4 TMEM8A LOC100134368
esv3637563 Chr.16:263248 - 505590 on Build GRCh38 Gain RGS11 RPL23AP5 DECR2 AXIN1 FAM234A RAB11FIP3 ARHGDIG NME4 PDIA2 TMEM8A MRPL28 LOC100134368
nsv570954 Chr.16:342461 - 530124 on Build GRCh38 Loss RPL23AP5 DECR2 AXIN1 RAB11FIP3 CAPN15 NME4 LINC00235 TMEM8A MRPL28 LOC100134368
nsv570956 Chr.16:376432 - 437728 on Build GRCh38 Gain RPL23AP5 DECR2 RAB11FIP3 NME4 TMEM8A LOC100134368
dgv4809n54 Chr.16:322597 - 451362 on Build GRCh38 Loss RPL23AP5 DECR2 AXIN1 RAB11FIP3 NME4 TMEM8A MRPL28 LOC100134368
nsv457303 Chr.16:383623 - 445662 on Build GRCh38 Loss RPL23AP5 DECR2 RAB11FIP3 NME4 LOC100134368
dgv32n68 Chr.16:245507 - 476226 on Build GRCh38 Loss RGS11 RPL23AP5 DECR2 AXIN1 FAM234A RAB11FIP3 ARHGDIG NME4 PDIA2 TMEM8A MRPL28 LOC100134368

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More Information


Additional Information:

For this assay, SNP(s) [rs117291741] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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