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Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:787950 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03919307_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 NP_001311015.1
NM_001324410.1 NP_001311339.1
NM_001324411.1 NP_001311340.1
NM_001324412.1 NP_001311341.1
NM_001324413.1 NP_001311342.1
NM_001324414.1 NP_001311343.1
NM_001324415.1 NP_001311344.1
NM_058192.2 NP_478072.1
AL514840.3
AL520203.3
BG686882.1
BM763460.1
BX358716.2
CN311777.1
CN311779.1
CX786721.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain RPUSD1 GNG13 MIR662 CHTF18 PRR25 MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain RPUSD1 GNG13 MIR662 CHTF18 PRR25 MSLN
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RNPS1 TSC2 PKD1 SNHG9 MIR6767 TMEM204 NTN3 NTHL1 PTX4 NOXO1 PRSS27 HBM HAGH HAGHL FAM234A NME4 NARFL PDPK1 SNORA78 MIR5587 TBC1D24 METRN RPUSD1 RGS11 LMF1 MIR1225 CHTF18 SNORD60 MIR3677 SSTR5-AS1 WDR90 MPG TMEM8A LOC107987233 LOC105371038 PIGQ LOC105371184 TPSD1 CEMP1 TPSB2 NUBP2 TRAF7 TPSG1 UBE2I LOC105371046 PRR25 CASKIN1 RHBDF1 MIR3178 MIR3180-5 PGP HBZ C16orf59 LINC00235 WDR24 PRSS29P C1QTNF8 RAB26 KCTD5 RHOT2 C16orf91 MLST8 RPL23AP5 HBQ1 SOX8 FAHD1 LOC105371049 EME2 NHLRC4 GNG13 RAB40C HN1L LOC105371047 SYNGR3 CLCN7 METTL26 MIR940 LMF1-AS1 SSTR5 IGFALS NPW SNORA64 RPS2 CCNF FLJ42627 RAB11FIP3 WFIKKN1 MIR6511B1 MIR3177 NDUFB10 AXIN1 NME3 RNF151 SNRNP25 HBA1 DECR2 CACNA1H SLC9A3R2 MRPL28 TBL3 MIR6768 FAM173A TSR3 SNHG19 CCDC154 MSLN PRR35 MIR4717 GFER POLR3K RHBDL1 HS3ST6 LOC100287175 MRPS34 ABCA17P IFT140 ARHGDIG LOC652276 CRAMP1 MSRB1 LUC7L FBXL16 MAPK8IP3 ECI1 HBA2 CCDC78 LOC105371045 TPSAB1 ZNF598 STUB1 NPRL3 LINC00254 DDX11L10 E4F1 TELO2 SPSB3 UNKL ERVK13-1 MIR6859-4 GNPTG AMDHD2 CAPN15 BRICD5 WASIR2 RPL3L JMJD8 MIR3176 ABCA3 MCRIP2 LOC107984876 LOC729652 BAIAP3 DNASE1L2 PDIA2 LOC101929280 ATP6V0C MEIOB MIR662 MIR4516 LOC106660606 SNORA10 LOC100134368
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC105371184 RAB11FIP3 WFIKKN1 STUB1 PRR25 FAM173A HAGHL LINC00235 WDR24 CAPN15 MSLN NARFL RHOT2 PRR35 JMJD8 MIR3176 MIR5587 METRN MCRIP2 RPUSD1 RHBDL1 LOC100287175 NHLRC4 GNG13 CHTF18 RAB40C WDR90 LOC101929280 METTL26 FBXL16 MIR662 CCDC78 LOC107987233 LOC105371038 PIGQ
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC105371184 RAB11FIP3 WFIKKN1 STUB1 PRR25 FAM173A HAGHL LINC00235 WDR24 CAPN15 MSLN NARFL RHOT2 PRR35 JMJD8 MIR3176 MIR5587 METRN MCRIP2 RPUSD1 RHBDL1 LOC100287175 NHLRC4 GNG13 CHTF18 RAB40C WDR90 LOC101929280 METTL26 FBXL16 MIR662 CCDC78 LOC107987233 LOC105371038 PIGQ
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC105371184 RAB11FIP3 WFIKKN1 STUB1 PRR25 FAM173A HAGHL LINC00235 WDR24 CAPN15 C1QTNF8 MSLN NARFL RHOT2 PRR35 JMJD8 MIR3176 SOX8 MIR5587 METRN MCRIP2 RPUSD1 RHBDL1 LMF1 LOC100287175 LOC107984876 NHLRC4 GNG13 CHTF18 RAB40C SSTR5-AS1 WDR90 LOC101929280 METTL26 LMF1-AS1 SSTR5 FBXL16 MIR662 CCDC78 LOC107987233 LOC105371038 PIGQ
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss RPUSD1 GNG13 CHTF18 PRR25
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371184 WFIKKN1 STUB1 FAM173A HAGHL WDR24 MSLN NARFL RHOT2 JMJD8 METRN MCRIP2 RPUSD1 RHBDL1 LOC100287175 GNG13 CHTF18 RAB40C WDR90 LOC101929280 METTL26 FBXL16 MIR662 CCDC78 LOC105371038 PIGQ
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC105371184 RAB11FIP3 WFIKKN1 STUB1 PRR25 FAM173A HAGHL LINC00235 WDR24 CAPN15 MSLN NARFL RHOT2 PRR35 JMJD8 MIR3176 MIR5587 METRN MCRIP2 RPUSD1 RHBDL1 LOC100287175 NHLRC4 GNG13 CHTF18 RAB40C WDR90 LOC101929280 METTL26 FBXL16 MIR662 CCDC78 LOC107987233 LOC105371038 PIGQ
nsv571043 Chr.16:787857 - 798755 on Build GRCh38 Loss RPUSD1 GNG13 CHTF18
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss RPUSD1 GNG13 CHTF18 PRR25
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss LOC105371184 METRN STUB1 MCRIP2 RPUSD1 RHBDL1 LOC100287175 GNG13 CHTF18 WDR90 FBXL16 FAM173A HAGHL MIR662 WDR24 CCDC78 MSLN NARFL RHOT2 LOC105371038 JMJD8
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss RPUSD1 MIR662 CHTF18 MSLN

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More Information


Additional Information:

For this assay, SNP(s) [rs76994839] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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