Hs03920927_cn

• Gene Symbol: PABPN1L
• Assay Reference Genome Location: Chr.16:88868139 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 390748
• Gene Name: poly(A) binding protein nuclear 1 like (cytoplasmic)
• Gene Aliases: PABPNL1, ePABP2
• Location: Chr.16:88862623-88870152 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PABPN1L	XM_017023230.1			XP_016878719.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	CBFA2T3 LOC107987238 APRT PABPN1L GALNS LOC105371409 LOC100129697 TRAPPC2L LOC101927793 CDT1 PIEZO1
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CTU2 LOC400558 LOC107987238 APRT LOC339059 GALNS MIR4722 ZNF778 CDT1 CDH15 LINC00304 LOC100289580 CBFA2T3 SLC22A31 ACSF3 PABPN1L LOC105371409 LOC100129697 TRAPPC2L LOC101927793 PIEZO1
nsv1928	Chr.16:88865211 - 88897277 on Build GRCh38	Insertion	CBFA2T3 PABPN1L LOC101927793
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	LOC400558 LOC107987238 APRT GALNS CDT1 CDH15 LINC00304 CBFA2T3 SLC22A31 ACSF3 PABPN1L LOC105371409 LOC100129697 TRAPPC2L LOC101927793
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC400558 LOC107987238 APRT LOC339059 GALNS ANKRD11 LOC105371414 ZNF778 CDT1 CDH15 LINC00304 LOC100287036 LOC100289580 CBFA2T3 SLC22A31 ACSF3 PABPN1L LOC105371409 LOC100129697 TRAPPC2L LOC101927793 PIEZO1
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	CBFA2T3 LOC107987238 APRT PABPN1L GALNS TRAPPC2L LOC101927793 CDT1 PIEZO1
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	LOC400558 LOC107987238 APRT GALNS CDT1 CDH15 LINC00304 CBFA2T3 ACSF3 PABPN1L LOC105371409 LOC100129697 TRAPPC2L LOC101927793
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	CBFA2T3 LOC107987238 APRT PABPN1L GALNS LOC105371409 LOC100129697 TRAPPC2L LOC101927793 CDT1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	CPNE7 CDK10 APRT LOC105371419 LOC105371414 DBNDD1 SNORD68 SNAI3 DPEP1 TCF25 LOC107984817 LOC101927817 ACSF3 SPIRE2 LOC100129697 TRAPPC2L TUBB3 SPG7 LOC400558 VPS9D1-AS1 MVD AFG3L1P URAHP ZNF276 CHMP1A ANKRD11 MIR4722 ZNF778 LINC00304 PRDM7 LOC100287036 DEF8 LOC100289580 CBFA2T3 SLC22A31 CENPBD1 CYBA SPATA33 PABPN1L SNAI3-AS1 RNF166 RPL13 FAM157C CTU2 VPS9D1 CDT1 FANCA IL17C LOC101927793 TUBB8P7 GAS8 LOC107987238 GAS8-AS1 LOC339059 GALNS SPATA2L CDH15 LOC105371409 MC1R PIEZO1
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	CBFA2T3 PABPN1L GALNS TRAPPC2L
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	CTU2 LOC107987238 APRT LOC339059 GALNS MIR4722 CDT1 LOC100289580 CBFA2T3 PABPN1L TRAPPC2L LOC101927793 PIEZO1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

translation initiation factor

Gene Ontology Categories:

Function(s)

nucleotide binding
RNA binding