Hs03921468_cn

• Gene Symbol: TRAPPC2L
• Assay Reference Genome Location: Chr.16:88857473 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 51693
• Gene Name: trafficking protein particle complex 2-like
• Gene Aliases: HSPC176
• Location: Chr.16:88856220-88862686 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRAPPC2L	NM_001318524.1			NP_001305453.1
	NM_001318525.1			NP_001305454.1
	NM_001318526.1			NP_001305455.1
	NM_001318527.1			NP_001305456.1
	NM_001318528.1			NP_001305457.1
	NM_001318529.1			NP_001305458.1
	NM_001318530.1			NP_001305459.1
	NM_001318532.1			NP_001305461.1
	NM_016209.4			NP_057293.1
	NR_134670.1
	NR_134671.1
	XM_017023270.1			XP_016878759.1
	AF089106.1			AAF00568.1
	AF161524.1			AAF29139.1
	AK126779.1			BAC86686.1
	AK307253.1
	AK310805.1
	AK311885.1
	AX771012.1			CAE01175.1
	AX771013.1			CAE01176.1
	AX771014.1			CAE01177.1
	BC011369.1			AAH11369.1
	BC018024.1			AAH18024.1
	BC105809.1			AAI05810.1
	BG283878.1
	BI754306.1
	BX340702.2
	BX384775.2
	BX419849.2
	DA209193.1
	DA293122.1
	DA295904.1
	DA833474.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	LOC107987238 CBFA2T3 LOC100129697 PABPN1L CDT1 LOC101927793 LOC105371409 APRT GALNS PIEZO1 TRAPPC2L
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	PABPN1L CDT1 ZNF778 CDH15 PIEZO1 CTU2 ACSF3 LOC107987238 CBFA2T3 LOC100129697 MIR4722 LOC400558 LOC101927793 LOC105371409 APRT SLC22A31 GALNS LOC100289580 TRAPPC2L LINC00304 LOC339059
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	PABPN1L CDT1 CDH15 ACSF3 LOC107987238 CBFA2T3 LOC100129697 LOC400558 LOC101927793 LOC105371409 APRT SLC22A31 GALNS TRAPPC2L LINC00304
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	PABPN1L CDT1 ZNF778 LOC105371414 CDH15 PIEZO1 ANKRD11 ACSF3 LOC107987238 CBFA2T3 LOC100129697 LOC100287036 LOC400558 LOC101927793 LOC105371409 APRT SLC22A31 GALNS LOC100289580 TRAPPC2L LINC00304 LOC339059
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	LOC107987238 CBFA2T3 PABPN1L CDT1 LOC101927793 APRT GALNS PIEZO1 TRAPPC2L
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	LOC107987238 CBFA2T3 LOC100129697 PABPN1L CDT1 LOC101927793 LOC105371409 APRT GALNS TRAPPC2L
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	PABPN1L CDT1 CDH15 ACSF3 LOC107987238 CBFA2T3 LOC100129697 LOC400558 LOC101927793 LOC105371409 APRT GALNS TRAPPC2L LINC00304
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	MVD CDT1 IL17C LOC107987238 SPATA2L APRT DPEP1 TRAPPC2L LOC339059 CDH15 SPIRE2 AFG3L1P DBNDD1 ANKRD11 VPS9D1-AS1 SPATA33 LOC105371419 PRDM7 CPNE7 LOC100129697 SNORD68 DEF8 MIR4722 CDK10 CYBA SPG7 TUBB3 LINC00304 RNF166 FANCA SNAI3 ZNF778 LOC105371414 RPL13 CBFA2T3 FAM157C LOC101927817 LOC400558 CENPBD1 LOC105371409 SLC22A31 SNAI3-AS1 LOC100289580 ZNF276 GAS8 PABPN1L VPS9D1 PIEZO1 CTU2 TUBB8P7 CHMP1A GAS8-AS1 ACSF3 LOC107984817 URAHP MC1R LOC100287036 LOC101927793 GALNS TCF25
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	CBFA2T3 PABPN1L GALNS TRAPPC2L
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	PABPN1L CDT1 PIEZO1 CTU2 LOC107987238 CBFA2T3 LOC100129697 MIR4722 LOC101927793 LOC105371409 APRT GALNS LOC100289580 TRAPPC2L LOC339059
nsv1063441	Chr.16:88767066 - 88861882 on Build GRCh38	Loss	LOC107987238 CDT1 APRT GALNS PIEZO1 TRAPPC2L

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein