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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2185912 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03921691_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC100287175 LOC105371049 CLCN7 CASKIN1 MIR1225 TPSAB1 AMDHD2 MIR3176 FAM234A PRSS27 LOC107987233 MIR662 NOXO1 HBA1 TBC1D24 ARHGDIG TMEM204 SSTR5-AS1 CHTF18 TSR3 LMF1-AS1 DDX11L10 LUC7L SNHG9 NDUFB10 SNORA78 STUB1 LOC105371184 CCDC78 SYNGR3 LOC105371038 ABCA3 LOC105371046 SNRNP25 RPS2 DNASE1L2 HBA2 RHOT2 MIR6511B1 MEIOB HN1L LOC101929280 HS3ST6 LINC00254 LOC107984876 FLJ42627 C16orf59 CEMP1 RAB11FIP3 LOC105371045 LMF1 MIR940 METTL26 METRN JMJD8 SNORA64 GNG13 LOC729652 KCTD5 RPUSD1 MLST8 C16orf91 RPL3L NTN3 RPL23AP5 TELO2 LINC00235 RNF151 MRPS34 LOC105371047 MIR3178 MCRIP2 ZNF598 HAGH GNPTG MIR3177 HBM POLR3K RAB26 PDIA2 MAPK8IP3 FBXL16 PGP PDPK1 MIR3180-5 MIR4516 WFIKKN1 SLC9A3R2 PRR25 CAPN15 UNKL SNHG19 BRICD5 MSLN NPRL3 MPG TBL3 MIR4717 ATP6V0C HAGHL LOC100134368 MIR6767 RNPS1 ECI1 PKD1 ERVK13-1 BAIAP3 RGS11 PRR35 TRAF7 PIGQ SSTR5 NTHL1 TMEM8A MRPL28 NME4 CCNF TPSG1 SNORD60 NME3 ABCA17P C1QTNF8 NHLRC4 RHBDL1 HBQ1 GFER AXIN1 TPSB2 CCDC154 NPW SOX8 MIR6768 IGFALS FAHD1 TSC2 MIR3677 SNORA10 RHBDF1 WDR90 MIR6859-4 E4F1 MIR5587 NUBP2 LOC652276 TPSD1 SPSB3 NARFL PRSS29P FAM173A DECR2 CACNA1H UBE2I LOC106660606 IFT140 WASIR2 PTX4 MSRB1 HBZ WDR24 RAB40C EME2 CRAMP1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss RAB26 LOC105371049 TRAF7 NTHL1 CASKIN1 MIR1225 DNASE1L2 SNORD60 PGP GFER MIR3180-5 MIR6511B1 MIR4516 NPW SLC9A3R2 TSC2 MIR3677 NOXO1 SNHG19 E4F1 MIR940 BRICD5 TBL3 MIR4717 MLST8 LOC106660606 RNPS1 ECI1 PKD1 ZNF598 SYNGR3 ABCA3
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss SNHG19 E4F1 RAB26 LOC105371049 TRAF7 BRICD5 CASKIN1 MIR1225 DNASE1L2 MLST8 SNORD60 PGP MIR3180-5 MIR6511B1 MIR4516 ECI1 TSC2 PKD1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss SNHG19 E4F1 MIR940 RAB26 TRAF7 BRICD5 CASKIN1 DNASE1L2 MLST8 SNORD60 PGP LOC106660606 RNPS1 ECI1 MIR3677
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss SNHG19 RAB26 LOC105371049 MIR3180-5 MIR6511B1 TRAF7 MIR4516 CASKIN1 MIR1225 TSC2 PKD1 SNORD60
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss E4F1 MIR940 LOC106660606 TRAF7 BRICD5 RNPS1 CASKIN1 DNASE1L2 MLST8 ECI1 MIR3677 PGP
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain RAB26 LOC105371049 TRAF7 CASKIN1 MIR1225 DNASE1L2 CCNF AMDHD2 SNORD60 PGP ABCA17P PDPK1 MIR3180-5 MIR6511B1 MIR4516 MIR6768 TSC2 MIR3677 C16orf59 CEMP1 TBC1D24 SNHG19 E4F1 MIR940 BRICD5 LOC652276 LOC729652 MIR4717 MLST8 ATP6V0C NTN3 MIR6767 LOC106660606 RNPS1 MIR3178 ECI1 PKD1 ABCA3
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion SNHG19 E4F1 MIR940 RAB26 TRAF7 BRICD5 CASKIN1 DNASE1L2 MIR4717 MLST8 SNORD60 PGP LOC106660606 RNPS1 ECI1 MIR3677 ABCA3

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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