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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2593582 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03922697_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC729652 NUBP2 PDIA2 MLST8 PTX4 TPSB2 FAM234A LINC00235 TPSAB1 MCRIP2 TPSD1 SSTR5-AS1 MRPS34 RGS11 LMF1-AS1 PKD1 NTN3 LOC105371184 RNPS1 MIR4516 AXIN1 SNORA64 PRR35 ABCA17P MPG NOXO1 ATP6V0C CAPN15 HAGHL MIR3177 SOX8 MIR4717 ECI1 SLC9A3R2 TELO2 IFT140 MRPL28 C16orf59 PDPK1 RAB26 MIR6767 RPL3L ERVK13-1 TSR3 LOC105371045 MSLN C16orf91 CCDC154 UNKL SNORD60 TSC2 RAB11FIP3 WDR24 HBM CACNA1H SYNGR3 HS3ST6 MAPK8IP3 CCDC78 RHBDF1 METTL26 WDR90 LOC652276 NME3 MIR3178 MIR3176 SNORA10 SNHG19 LOC107984876 TBL3 LOC105371049 MIR662 PGP RHBDL1 MIR6768 LOC105371038 TPSG1 FLJ42627 CLCN7 FAM173A CCNF HBQ1 METRN HBZ GNPTG PIGQ RAB40C SNORA78 ZNF598 EME2 MEIOB TRAF7 LOC100134368 CRAMP1 E4F1 NPW CEMP1 NDUFB10 LOC106660606 NME4 STUB1 POLR3K TBC1D24 NTHL1 HAGH MIR1225 MIR3677 DECR2 C1QTNF8 BAIAP3 JMJD8 NARFL DNASE1L2 NHLRC4 LOC107987233 MIR940 LOC101929280 SNHG9 GFER RPS2 HN1L UBE2I MIR6511B1 GNG13 HBA1 MIR6859-4 IGFALS FBXL16 LMF1 BRICD5 NPRL3 LUC7L LINC00254 RNF151 WASIR2 CASKIN1 HBA2 TMEM204 SPSB3 RPL23AP5 LOC105371047 SSTR5 MSRB1 ABCA3 CHTF18 LOC105371046 PRR25 MIR5587 RPUSD1 MIR3180-5 LOC100287175 RHOT2 DDX11L10 SNRNP25 AMDHD2 PRSS29P KCTD5 FAHD1 WFIKKN1 PRSS27 ARHGDIG TMEM8A
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss FLJ42627 CEMP1 PDPK1 ERVK13-1 TBC1D24 PRSS41 PRSS21 AMDHD2 SRRM2-AS1 SRRM2 ATP6V0C KCTD5 PRSS33 LOC652276 MIR3178 TCEB2 PRSS27
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain FLJ42627 PDPK1 ERVK13-1 LOC652276
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss FLJ42627 CEMP1 PDPK1 AMDHD2 ERVK13-1 ATP6V0C TBC1D24 LOC652276 MIR3178
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6511B1 C16orf59 CCNF PDPK1 LOC729652 RAB26 MIR6767 MLST8 BRICD5 SNORD60 TSC2 CASKIN1 TRAF7 E4F1 LOC652276 MIR3178 CEMP1 ABCA3 PKD1 SNHG19 NTN3 RNPS1 MIR4516 LOC106660606 MIR3180-5 TBC1D24 LOC105371049 MIR1225 MIR3677 PGP DNASE1L2 MIR6768 AMDHD2 ABCA17P ATP6V0C MIR940 MIR4717 ECI1
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss FLJ42627 PDPK1 SRRM2-AS1 ERVK13-1 SRRM2 KCTD5 LOC652276 PRSS27

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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