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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89758215 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03923243_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 32
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC107984817 LOC105371419 SPIRE2 FANCA TCF25 ZNF276
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain VPS9D1-AS1 LOC107984817 LOC105371419 SPIRE2 CDK10 FANCA VPS9D1 SPATA2L SPATA33 ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss LOC107984817 CHMP1A DBNDD1 CENPBD1 SPIRE2 CDK10 GAS8-AS1 AFG3L1P SPATA33 VPS9D1-AS1 DEF8 TUBB3 MC1R DPEP1 GAS8 LOC105371419 FANCA TCF25 VPS9D1 SPATA2L ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss LOC107984817 SNORD68 DBNDD1 SPIRE2 GAS8-AS1 FAM157C AFG3L1P LOC100287036 TUBB8P7 VPS9D1-AS1 TUBB3 TCF25 SPATA2L PRDM7 ZNF778 CPNE7 CHMP1A RPL13 CENPBD1 SPG7 CDK10 LOC101927817 SPATA33 URAHP DEF8 MC1R DPEP1 GAS8 LOC105371419 FANCA ANKRD11 VPS9D1 LOC105371414 ZNF276
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC107984817 LOC105371419 SPIRE2 FANCA ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SNORD68 AFG3L1P SNAI3-AS1 SLC22A31 MVD PRDM7 APRT ZNF778 CHMP1A SPG7 IL17C CDK10 SPATA33 CDT1 URAHP RNF166 CBFA2T3 DEF8 MC1R GAS8 GALNS VPS9D1 CDH15 LOC105371414 TRAPPC2L LOC100129697 LOC107984817 DBNDD1 PIEZO1 SPIRE2 GAS8-AS1 FAM157C PABPN1L LOC100287036 LOC105371409 TUBB8P7 VPS9D1-AS1 TUBB3 CYBA TCF25 LOC101927793 SPATA2L LOC100289580 ACSF3 LINC00304 MIR4722 CTU2 CPNE7 RPL13 CENPBD1 LOC339059 LOC101927817 DPEP1 LOC105371419 SNAI3 FANCA ANKRD11 LOC107987238 ZNF276 LOC400558
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SNORD68 CPNE7 CHMP1A RPL13 SPG7 CDK10 SPATA33 VPS9D1-AS1 DPEP1 FANCA VPS9D1 SPATA2L ZNF276

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