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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89758215 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03923243_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 32
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss SPIRE2 ZNF276 LOC107984817 TCF25 FANCA LOC105371419
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss DBNDD1 LOC107984817 AFG3L1P GAS8-AS1 VPS9D1 TUBB3 TCF25 DPEP1 GAS8 CDK10 SPATA33 LOC105371419 CENPBD1 SPIRE2 ZNF276 SPATA2L MC1R FANCA CHMP1A DEF8 VPS9D1-AS1
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPIRE2 ZNF276 LOC107984817 VPS9D1 SPATA2L FANCA CDK10 SPATA33 VPS9D1-AS1 LOC105371419
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss LOC100287036 DBNDD1 LOC107984817 AFG3L1P VPS9D1 TUBB3 GAS8 CDK10 CPNE7 LOC105371419 CENPBD1 LOC101927817 SPIRE2 TUBB8P7 RPL13 SPATA2L FANCA DEF8 VPS9D1-AS1 PRDM7 GAS8-AS1 TCF25 DPEP1 ANKRD11 SPATA33 FAM157C ZNF778 URAHP ZNF276 MC1R LOC105371414 CHMP1A SPG7 SNORD68
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss SPIRE2 ZNF276 LOC107984817 FANCA LOC105371419
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC100287036 DBNDD1 LOC107984817 AFG3L1P VPS9D1 TUBB3 LOC100289580 PABPN1L LOC101927817 FANCA DEF8 VPS9D1-AS1 LOC101927793 SNAI3 CBFA2T3 SNAI3-AS1 GAS8-AS1 DPEP1 ANKRD11 PIEZO1 APRT CYBA CDT1 LOC105371414 CHMP1A SNORD68 LOC339059 SLC22A31 CDH15 GAS8 CDK10 MVD CPNE7 LOC105371419 CENPBD1 TRAPPC2L CTU2 SPIRE2 TUBB8P7 LOC100129697 RPL13 SPATA2L PRDM7 MIR4722 LOC400558 RNF166 IL17C TCF25 LOC105371409 SPATA33 ACSF3 FAM157C LOC107987238 LINC00304 ZNF778 URAHP ZNF276 MC1R GALNS SPG7
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion VPS9D1 DPEP1 CDK10 SPATA33 CPNE7 ZNF276 RPL13 SPATA2L FANCA CHMP1A SPG7 VPS9D1-AS1 SNORD68

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