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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2590378 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03925510_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication E4F1 NTN3 METTL26 HBZ LMF1-AS1 NARFL WFIKKN1 EME2 MRPS34 MIR662 NTHL1 FAM173A BAIAP3 SNRNP25 RAB26 LOC105371184 HS3ST6 NPRL3 ZNF598 POLR3K FAM234A ABCA3 RNPS1 BRICD5 SLC9A3R2 LOC105371047 TELO2 LOC105371046 LUC7L LOC101929280 MPG RNF151 ABCA17P MIR3180-5 ARHGDIG CEMP1 HBM SNORD60 SOX8 TMEM8A LOC106660606 KCTD5 MIR4516 C1QTNF8 MIR5587 MIR6511B1 NUBP2 HN1L MSLN LOC652276 PKD1 AMDHD2 HAGHL HBA1 CHTF18 RPL3L LOC105371038 IFT140 METRN NDUFB10 SPSB3 MIR3177 HBQ1 PRSS29P WDR90 RPL23AP5 NME4 GNG13 PTX4 WDR24 ATP6V0C PIGQ PDIA2 MCRIP2 SNORA78 MIR6859-4 CASKIN1 TPSAB1 MIR3178 FBXL16 PRR35 GFER RHOT2 MIR3677 DNASE1L2 FAHD1 LINC00235 TPSB2 RAB11FIP3 TBL3 PRSS27 RHBDL1 CCDC154 MIR940 RPS2 ECI1 MRPL28 LOC100134368 LMF1 SNORA10 LOC100287175 UNKL PRR25 FLJ42627 LOC105371045 SSTR5-AS1 WASIR2 TPSG1 TRAF7 SYNGR3 CCNF CCDC78 HBA2 MIR4717 MEIOB CLCN7 STUB1 RHBDF1 SNHG19 ERVK13-1 CAPN15 UBE2I LOC729652 MLST8 DDX11L10 MIR6767 CACNA1H TSC2 JMJD8 C16orf91 NME3 C16orf59 RAB40C TMEM204 GNPTG RPUSD1 NPW RGS11 TPSD1 IGFALS NHLRC4 HAGH LINC00254 DECR2 MIR1225 SSTR5 TSR3 TBC1D24 LOC107984876 MAPK8IP3 LOC107987233 PDPK1 MIR6768 LOC105371049 AXIN1 PGP SNORA64 CRAMP1 NOXO1 MIR3176 MSRB1 SNHG9
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss MIR3178 KCTD5 ERVK13-1 PRSS33 TBC1D24 FLJ42627 LOC652276 SRRM2-AS1 AMDHD2 PDPK1 PRSS21 PRSS41 SRRM2 ATP6V0C PRSS27 CEMP1 TCEB2
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss PDPK1 MIR3178 ERVK13-1 ATP6V0C TBC1D24 CEMP1 FLJ42627 LOC652276 AMDHD2
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4717 E4F1 SNORD60 MIR3178 NTN3 LOC106660606 MIR4516 SNHG19 MIR6511B1 LOC729652 MLST8 MIR6767 LOC652276 MIR3677 DNASE1L2 PKD1 AMDHD2 TSC2 C16orf59 RAB26 MIR940 MIR1225 ECI1 ABCA3 RNPS1 BRICD5 TBC1D24 PDPK1 MIR6768 LOC105371049 PGP TRAF7 ATP6V0C ABCA17P MIR3180-5 CEMP1 CCNF CASKIN1
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss PDPK1 KCTD5 SRRM2 ERVK13-1 PRSS27 FLJ42627 LOC652276 SRRM2-AS1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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