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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2590378 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03925510_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBZ HS3ST6 MEIOB SPSB3 TPSB2 WDR24 C16orf91 PDIA2 RHOT2 LOC106660606 LINC00254 C1QTNF8 SNORD60 IGFALS DECR2 MIR6768 KCTD5 ERVK13-1 LOC105371038 LOC729652 LOC105371045 GFER RAB40C MIR3180-5 ECI1 BAIAP3 METRN CEMP1 EME2 TBC1D24 E4F1 NDUFB10 ARHGDIG HN1L PTX4 BRICD5 MIR3176 LOC105371184 CLCN7 STUB1 PDPK1 WASIR2 CCDC78 LMF1 SNHG19 LUC7L RPS2 HBA1 NTHL1 LMF1-AS1 NPW LOC105371047 CACNA1H MIR662 UNKL MIR5587 MIR3178 LOC100134368 CHTF18 TELO2 IFT140 LOC107987233 MIR3677 RAB11FIP3 SNHG9 MIR6511B1 SLC9A3R2 NOXO1 CAPN15 HBM MSRB1 LOC105371046 NME3 CCNF C16orf59 UBE2I TPSD1 HBQ1 AXIN1 SNORA10 MIR3177 RPUSD1 TMEM8A PIGQ CRAMP1 POLR3K PKD1 ABCA17P GNG13 ABCA3 METTL26 MIR1225 GNPTG RGS11 HBA2 LOC100287175 WFIKKN1 JMJD8 CASKIN1 NME4 RNPS1 FBXL16 TRAF7 RHBDF1 MIR6767 NTN3 DDX11L10 ATP6V0C NPRL3 SSTR5-AS1 FAM234A TBL3 SOX8 ZNF598 SNORA64 PRSS27 TPSAB1 FLJ42627 MAPK8IP3 LOC652276 PRSS29P LOC107984876 MPG SNORA78 TPSG1 HAGHL RPL3L NUBP2 MRPS34 NHLRC4 MSLN MLST8 MIR4516 PGP LINC00235 MIR4717 MCRIP2 RHBDL1 AMDHD2 PRR35 FAM173A RNF151 SYNGR3 RAB26 MIR6859-4 CCDC154 LOC105371049 HAGH DNASE1L2 LOC101929280 TSR3 SNRNP25 WDR90 TMEM204 TSC2 SSTR5 NARFL MIR940 MRPL28 RPL23AP5 PRR25 FAHD1
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss KCTD5 SRRM2 ERVK13-1 ATP6V0C SRRM2-AS1 CEMP1 TBC1D24 PRSS21 AMDHD2 PRSS27 PRSS33 FLJ42627 MIR3178 PRSS41 PDPK1 LOC652276 TCEB2
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ERVK13-1 ATP6V0C AMDHD2 FLJ42627 MIR3178 PDPK1 CEMP1 LOC652276 TBC1D24
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain SNHG19 MLST8 PKD1 ABCA17P MIR4516 PGP ABCA3 MIR1225 MIR4717 LOC106660606 AMDHD2 SNORD60 CASKIN1 MIR3178 MIR6768 RNPS1 TRAF7 MIR6767 MIR3677 NTN3 ATP6V0C LOC729652 RAB26 MIR6511B1 MIR3180-5 ECI1 LOC105371049 CEMP1 TBC1D24 E4F1 DNASE1L2 TSC2 CCNF BRICD5 MIR940 C16orf59 PDPK1 LOC652276
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss KCTD5 SRRM2 ERVK13-1 PRSS27 SRRM2-AS1 FLJ42627 PDPK1 LOC652276

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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