Hs03928319_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1786113 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	XM_005255027.2			XP_005255084.1
	XM_005255030.1			XP_005255087.1
	XM_011522338.2			XP_011520640.1
	XM_017022831.1			XP_016878320.1
	XM_017022832.1			XP_016878321.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1
	AK124460.1	1	1403
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv457335	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	MAPK8IP3 MRPS34 MIR3177 NUBP2 EME2 SPSB3 NME3
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	POLR3K CASKIN1 LMF1 HN1L HS3ST6 HBQ1 UBE2I SOX8 LOC105371045 PRR25 PRSS29P NME3 TBC1D24 ABCA17P TBL3 MIR6768 NDUFB10 WASIR2 FAM173A SNORA64 CCDC78 LOC107987233 MPG BAIAP3 NHLRC4 HAGH TPSG1 NUBP2 FAM234A MIR3180-5 LOC105371049 MRPL28 TMEM204 MEIOB RPL23AP5 SNORA10 PRSS27 MIR4516 NTHL1 RNF151 NPRL3 RAB40C METTL26 TSC2 LOC652276 GNPTG DDX11L10 SPSB3 ATP6V0C AMDHD2 MIR5587 NME4 ARHGDIG RAB26 MRPS34 MIR4717 DECR2 MIR3177 LINC00235 KCTD5 WDR24 CEMP1 CRAMP1 LOC107984876 RGS11 TPSD1 CLCN7 MSRB1 LOC729652 MCRIP2 SNHG19 PDPK1 MIR1225 MSLN IGFALS WDR90 AXIN1 NTN3 CHTF18 MIR6767 JMJD8 CCNF RPL3L LOC105371038 SNORD60 NARFL LOC100134368 UNKL PTX4 TSR3 CACNA1H PGP TRAF7 WFIKKN1 PRR35 LOC101929280 RHOT2 E4F1 HBM GFER RAB11FIP3 RHBDF1 LOC105371047 HBA1 METRN DNASE1L2 SYNGR3 SLC9A3R2 STUB1 LMF1-AS1 LUC7L PIGQ GNG13 ZNF598 MIR3178 C16orf91 NOXO1 MIR6859-4 FBXL16 ECI1 LOC106660606 MIR3176 MIR6511B1 MLST8 TPSAB1 CCDC154 SNRNP25 RPUSD1 LOC105371184 NPW MIR940 SSTR5-AS1 MAPK8IP3 HBZ LOC105371046 C1QTNF8 PDIA2 FLJ42627 RNPS1 SSTR5 RPS2 BRICD5 ABCA3 PKD1 TPSB2 TMEM8A LOC100287175 MIR3677 MIR662 HBA2 EME2 IFT140 SNHG9 TELO2 CAPN15 RHBDL1 ERVK13-1 LINC00254 FAHD1 C16orf59 SNORA78 HAGHL
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	MAPK8IP3 HAGH MRPS34 IGFALS NUBP2 EME2 SPSB3 NME3
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	MAPK8IP3 MRPS34 MIR3177 IGFALS NUBP2 EME2 SPSB3 NME3
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	MAPK8IP3 MRPS34 IGFALS NUBP2 EME2 SPSB3 NME3
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	MEIOB HAGH IGFALS NUBP2 FAHD1
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	CRAMP1 HN1L HAGH NUBP2 EME2 SPSB3 NME3 IFT140 MAPK8IP3 LOC105371046 MRPS34 MIR3177 IGFALS
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	MAPK8IP3 MRPS34 IGFALS NUBP2 EME2 SPSB3 NME3
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	LOC105371047 CRAMP1 HN1L HAGH NUBP2 EME2 SPSB3 TMEM204 NME3 IFT140 TELO2 MEIOB MAPK8IP3 LOC105371046 MRPS34 MIR3177 IGFALS FAHD1
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	MAPK8IP3 MRPS34 IGFALS NUBP2 EME2 SPSB3 NME3
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	CRAMP1 HN1L HAGH NUBP2 EME2 SPSB3 NME3 MEIOB MAPK8IP3 MRPS34 MIR3177 IGFALS FAHD1
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	MAPK8IP3 HAGH MRPS34 MIR3177 IGFALS NUBP2 FAHD1 EME2 SPSB3 NME3
nsv571170	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	MAPK8IP3 MRPS34 IGFALS NUBP2 EME2 SPSB3 NME3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding