Hs03928319_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1786113 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	XM_005255027.2			XP_005255084.1
	XM_005255030.1			XP_005255087.1
	XM_011522338.2			XP_011520640.1
	XM_017022831.1			XP_016878320.1
	XM_017022832.1			XP_016878321.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1
	AK124460.1	1	1403
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv571169	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	NME3 MAPK8IP3 SPSB3 EME2 MRPS34 MIR3177 NUBP2
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	PIGQ RPS2 NPW CHTF18 ECI1 HN1L LOC105371046 MIR3677 TPSAB1 GNG13 WASIR2 NHLRC4 RHBDL1 RPL3L AXIN1 MPG NUBP2 NME4 E4F1 MIR4717 C16orf59 STUB1 NME3 SNRNP25 SNORA10 C16orf91 SNORA64 RHOT2 TRAF7 LOC101929280 AMDHD2 HBM IGFALS LOC100287175 CCDC78 LOC106660606 SNORD60 PRSS29P TSR3 PDIA2 SNHG19 RAB11FIP3 LOC105371047 JMJD8 MIR6767 MIR3180-5 MIR6511B1 FBXL16 NPRL3 CCDC154 LOC729652 CACNA1H RGS11 MSLN ATP6V0C ZNF598 LOC105371049 CRAMP1 PTX4 PGP SNORA78 NOXO1 MEIOB SNHG9 EME2 RPUSD1 LOC107984876 LMF1-AS1 MCRIP2 UBE2I LOC105371038 CAPN15 HBZ LOC652276 MIR3176 MRPS34 MRPL28 LUC7L RPL23AP5 NDUFB10 LINC00235 MAPK8IP3 PDPK1 SLC9A3R2 DNASE1L2 METTL26 MIR940 HAGHL SOX8 MIR6768 MIR1225 NARFL WDR90 RAB26 LMF1 TMEM8A KCTD5 TPSG1 BRICD5 RNPS1 SYNGR3 HBA2 RNF151 PRR35 TELO2 TSC2 WFIKKN1 ABCA17P GNPTG ABCA3 RAB40C NTHL1 SSTR5-AS1 SSTR5 FAM234A MIR3178 PRSS27 MIR3177 FLJ42627 FAHD1 LOC105371045 MIR662 C1QTNF8 MSRB1 CLCN7 SPSB3 FAM173A LINC00254 TMEM204 HAGH LOC105371184 PKD1 TBC1D24 POLR3K BAIAP3 TBL3 UNKL NTN3 RHBDF1 ARHGDIG CASKIN1 CEMP1 MIR5587 TPSD1 GFER IFT140 LOC107987233 LOC100134368 METRN HBA1 DDX11L10 TPSB2 CCNF MLST8 MIR4516 MIR6859-4 PRR25 HS3ST6 DECR2 WDR24 ERVK13-1 HBQ1
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	NME3 MAPK8IP3 SPSB3 EME2 IGFALS MRPS34 HAGH NUBP2
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	NME3 MAPK8IP3 SPSB3 EME2 IGFALS MRPS34 MIR3177 NUBP2
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	NME3 MAPK8IP3 SPSB3 EME2 IGFALS MRPS34 NUBP2
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	MEIOB IGFALS HAGH NUBP2 FAHD1
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	NME3 MAPK8IP3 SPSB3 HN1L EME2 LOC105371046 HAGH IGFALS MRPS34 IFT140 MIR3177 NUBP2 CRAMP1
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	NME3 MAPK8IP3 SPSB3 EME2 IGFALS MRPS34 NUBP2
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	NME3 MEIOB MAPK8IP3 TELO2 SPSB3 HN1L EME2 LOC105371047 LOC105371046 TMEM204 HAGH IGFALS MRPS34 IFT140 MIR3177 NUBP2 FAHD1 CRAMP1
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	NME3 MAPK8IP3 SPSB3 EME2 IGFALS MRPS34 NUBP2
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	NME3 MEIOB MAPK8IP3 SPSB3 HN1L EME2 HAGH IGFALS MRPS34 MIR3177 NUBP2 FAHD1 CRAMP1
nsv457336	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	NME3 MAPK8IP3 SPSB3 EME2 IGFALS MRPS34 NUBP2
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	NME3 MAPK8IP3 SPSB3 EME2 IGFALS MRPS34 HAGH MIR3177 NUBP2 FAHD1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding