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Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89741495 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03930008_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 39
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA VPS9D1 VPS9D1-AS1 ZNF276
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss SPIRE2 FANCA LOC105371419 LOC107984817 TCF25 ZNF276
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion SPATA2L FANCA VPS9D1 VPS9D1-AS1 CDK10 ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L MC1R GAS8-AS1 DPEP1 LOC105371419 DBNDD1 CENPBD1 TUBB3 AFG3L1P SPATA33 CDK10 ZNF276 SPIRE2 FANCA VPS9D1 LOC107984817 CHMP1A VPS9D1-AS1 TCF25 GAS8 DEF8
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA2L SPIRE2 FANCA LOC105371419 VPS9D1 LOC107984817 VPS9D1-AS1 SPATA33 CDK10 ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss LOC100287036 SPATA2L GAS8-AS1 ANKRD11 LOC105371419 TUBB8P7 DBNDD1 CENPBD1 TUBB3 FAM157C SPATA33 ZNF276 URAHP SPIRE2 LOC101927817 LOC107984817 CHMP1A SPG7 SNORD68 RPL13 GAS8 MC1R DPEP1 AFG3L1P CPNE7 ZNF778 CDK10 LOC105371414 FANCA PRDM7 VPS9D1 VPS9D1-AS1 TCF25 DEF8
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss SPIRE2 FANCA LOC105371419 LOC107984817 ZNF276
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss SPATA2L FANCA VPS9D1 VPS9D1-AS1 CDK10 ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss MIR4722 SPATA2L ANKRD11 LOC105371419 TUBB8P7 DBNDD1 TUBB3 FAM157C SPATA33 LOC101927793 PABPN1L RNF166 SPIRE2 CDH15 CBFA2T3 LOC400558 CHMP1A SPG7 SNORD68 GAS8 PIEZO1 MC1R ACSF3 CPNE7 SNAI3 ZNF778 FANCA VPS9D1 GALNS LOC100289580 VPS9D1-AS1 TCF25 CYBA DEF8 LOC100287036 GAS8-AS1 LOC339059 CENPBD1 LOC107987238 ZNF276 URAHP LOC100129697 LOC105371409 TRAPPC2L LOC101927817 APRT LOC107984817 RPL13 SNAI3-AS1 CTU2 DPEP1 AFG3L1P CDT1 CDK10 MVD LOC105371414 PRDM7 SLC22A31 LINC00304 IL17C
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA2L DPEP1 CPNE7 SPATA33 CDK10 ZNF276 FANCA VPS9D1 CHMP1A SPG7 SNORD68 RPL13 VPS9D1-AS1

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