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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89741495 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03930008_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 39
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion VPS9D1 ZNF276 FANCA VPS9D1-AS1
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss SPIRE2 LOC105371419 LOC107984817 ZNF276 TCF25 FANCA
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion CDK10 VPS9D1 ZNF276 FANCA SPATA2L VPS9D1-AS1
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPIRE2 CDK10 LOC105371419 VPS9D1 LOC107984817 ZNF276 SPATA33 FANCA SPATA2L VPS9D1-AS1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss TUBB3 GAS8-AS1 SPIRE2 CENPBD1 CDK10 DBNDD1 LOC105371419 VPS9D1 SPATA33 TCF25 FANCA SPATA2L VPS9D1-AS1 GAS8 DEF8 DPEP1 CHMP1A MC1R LOC107984817 ZNF276 AFG3L1P
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss TUBB3 LOC101927817 ANKRD11 URAHP DBNDD1 LOC105371419 LOC105371414 TCF25 FANCA SPATA2L DEF8 FAM157C CHMP1A MC1R AFG3L1P SNORD68 GAS8-AS1 SPIRE2 CENPBD1 CDK10 VPS9D1 PRDM7 LOC100287036 SPATA33 RPL13 VPS9D1-AS1 GAS8 CPNE7 DPEP1 SPG7 ZNF778 TUBB8P7 LOC107984817 ZNF276
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss SPIRE2 LOC105371419 LOC107984817 ZNF276 FANCA
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss CDK10 VPS9D1 ZNF276 FANCA SPATA2L VPS9D1-AS1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss TUBB3 URAHP LOC105371419 FANCA SPATA2L APRT DEF8 LOC100129697 FAM157C CHMP1A ACSF3 SNAI3-AS1 LOC339059 SNORD68 CTU2 SPIRE2 CENPBD1 CDK10 CDT1 PRDM7 IL17C SPATA33 RPL13 GAS8 CPNE7 CBFA2T3 ZNF778 SLC22A31 ZNF276 SNAI3 PIEZO1 RNF166 LOC101927817 ANKRD11 PABPN1L LOC100289580 DBNDD1 CYBA LOC105371414 TCF25 LOC400558 MC1R LINC00304 AFG3L1P MVD GAS8-AS1 LOC107987238 LOC101927793 VPS9D1 TRAPPC2L LOC100287036 VPS9D1-AS1 GALNS DPEP1 SPG7 MIR4722 CDH15 TUBB8P7 LOC107984817 LOC105371409
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SNORD68 CDK10 VPS9D1 SPATA33 RPL13 FANCA SPATA2L VPS9D1-AS1 CPNE7 DPEP1 SPG7 CHMP1A ZNF276

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