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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2181064 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03931012_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 2336 NP_065815.1
AB037727.1 10 1473 BAA92544.1
AF451977.1 18 2402 AAL49758.1
BC042011.1 9 1355 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication METTL26 LOC107987233 CASKIN1 C16orf91 NME4 PDIA2 CLCN7 WASIR2 SNHG19 MIR4516 MIR3180-5 IFT140 RAB11FIP3 MIR662 TMEM8A MIR6859-4 TRAF7 LMF1-AS1 DECR2 WDR24 HN1L CCDC78 TBC1D24 STUB1 HBA2 TPSB2 PTX4 MPG C1QTNF8 NTHL1 SNORD60 HAGH LOC100287175 EME2 ABCA3 MIR6767 MIR3677 NTN3 TMEM204 GNPTG PRR25 LINC00254 ZNF598 E4F1 CHTF18 MIR4717 MIR3177 CRAMP1 MIR3178 RAB40C TPSD1 SLC9A3R2 RHBDF1 CEMP1 RHBDL1 FLJ42627 ECI1 HBA1 PRR35 LOC105371047 GNG13 RPS2 RNPS1 NARFL PKD1 MRPS34 RAB26 MSLN MIR940 SNRNP25 C16orf59 CAPN15 METRN LOC107984876 JMJD8 PRSS27 LOC105371184 PIGQ FAM234A LOC105371038 UBE2I CACNA1H NUBP2 PGP SSTR5-AS1 DDX11L10 TELO2 TSR3 LOC105371045 MEIOB CCNF SNORA64 MLST8 SPSB3 SSTR5 MIR6768 ARHGDIG SOX8 NPW RHOT2 LOC729652 LOC105371046 ATP6V0C SYNGR3 KCTD5 UNKL RPL23AP5 BAIAP3 PRSS29P SNORA10 HAGHL RPUSD1 ERVK13-1 MRPL28 WFIKKN1 MIR5587 MSRB1 SNORA78 TSC2 RPL3L NHLRC4 HBZ FBXL16 BRICD5 FAM173A HBM RGS11 NPRL3 MIR6511B1 LMF1 LINC00235 NDUFB10 RNF151 HBQ1 MAPK8IP3 LOC105371049 SNHG9 MIR3176 LOC100134368 NME3 POLR3K TBL3 AMDHD2 FAHD1 MCRIP2 CCDC154 MIR1225 HS3ST6 DNASE1L2 GFER WDR90 LOC101929280 NOXO1 PDPK1 LUC7L ABCA17P TPSAB1 TPSG1 IGFALS LOC652276 LOC106660606 AXIN1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss BRICD5 CASKIN1 PGP MIR6511B1 MLST8 SNHG19 MIR4516 SLC9A3R2 MIR3180-5 LOC105371049 ECI1 NPW TBL3 RNPS1 TRAF7 PKD1 RAB26 SYNGR3 MIR1225 DNASE1L2 GFER NTHL1 SNORD60 NOXO1 TSC2 ZNF598 E4F1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss PKD1 BRICD5 CASKIN1 RAB26 PGP MIR1225 DNASE1L2 SNORD60 MIR6511B1 MLST8 SNHG19 MIR4516 MIR3180-5 LOC105371049 TSC2 ECI1 TRAF7 E4F1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss BRICD5 CASKIN1 RAB26 PGP DNASE1L2 MIR940 SNORD60 MLST8 SNHG19 MIR3677 ECI1 LOC106660606 RNPS1 TRAF7 E4F1
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR4516 PKD1 CASKIN1 MIR3180-5 RAB26 LOC105371049 MIR1225 TSC2 SNORD60 MIR6511B1 TRAF7 SNHG19
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain BRICD5 CASKIN1 PGP MIR4717 MIR3178 CCNF MIR6511B1 MLST8 SNHG19 MIR4516 MIR6768 MIR3180-5 LOC105371049 CEMP1 ECI1 AMDHD2 RNPS1 TRAF7 LOC729652 PKD1 RAB26 ATP6V0C TBC1D24 MIR1225 DNASE1L2 MIR940 SNORD60 C16orf59 PDPK1 ABCA17P ABCA3 MIR6767 MIR3677 NTN3 TSC2 LOC652276 LOC106660606 E4F1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss BRICD5 CASKIN1 PGP MIR3677 DNASE1L2 MIR940 ECI1 LOC106660606 RNPS1 MLST8 TRAF7 E4F1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion BRICD5 CASKIN1 RAB26 PGP MIR4717 DNASE1L2 MIR940 SNORD60 MLST8 SNHG19 ABCA3 MIR3677 ECI1 LOC106660606 RNPS1 TRAF7 E4F1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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