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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2588408 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03935547_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MSLN MIR3176 SNORA10 C16orf59 RPUSD1 LOC100134368 TPSG1 EME2 RHBDL1 PDIA2 CCDC154 MRPL28 NDUFB10 FLJ42627 HS3ST6 AXIN1 FBXL16 DNASE1L2 SSTR5 TMEM8A LOC100287175 E4F1 BRICD5 CASKIN1 LINC00235 HN1L MIR662 KCTD5 NHLRC4 MIR6768 MLST8 LOC106660606 RNPS1 PRR35 RPL3L NTN3 LOC105371047 HAGHL MCRIP2 MPG PTX4 LOC105371046 LOC105371184 CHTF18 PIGQ RHOT2 POLR3K LOC107987233 NTHL1 IFT140 FAHD1 MIR6511B1 JMJD8 UBE2I C1QTNF8 CCNF TPSAB1 NPW MSRB1 WASIR2 NUBP2 CRAMP1 SNORD60 MIR3180-5 LMF1 SNORA78 MIR4516 MIR1225 RPL23AP5 MRPS34 WFIKKN1 HBM MIR3178 PKD1 SNHG19 NOXO1 RPS2 ECI1 LOC105371045 MIR940 METTL26 LINC00254 AMDHD2 LOC729652 FAM173A ABCA17P MIR5587 NPRL3 TBC1D24 LMF1-AS1 RAB11FIP3 UNKL BAIAP3 MIR3677 MIR6859-4 PRR25 CCDC78 SNHG9 NARFL ARHGDIG HAGH FAM234A LOC101929280 TPSD1 SSTR5-AS1 RAB40C RGS11 GNG13 ATP6V0C STUB1 TMEM204 ABCA3 SNORA64 TRAF7 MIR4717 DECR2 MAPK8IP3 MIR3177 HBZ CACNA1H TSR3 C16orf91 CEMP1 MIR6767 HBQ1 GNPTG METRN TBL3 SOX8 ZNF598 NME3 TPSB2 SYNGR3 LUC7L HBA1 IGFALS RAB26 ERVK13-1 HBA2 SLC9A3R2 RHBDF1 MEIOB NME4 PGP RNF151 LOC652276 CAPN15 SPSB3 TELO2 CLCN7 TSC2 LOC107984876 DDX11L10 WDR24 WDR90 LOC105371038 PDPK1 PRSS27 LOC105371049 GFER SNRNP25 PRSS29P
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PRSS41 LOC652276 CEMP1 SRRM2 SRRM2-AS1 KCTD5 AMDHD2 PRSS33 ATP6V0C TBC1D24 FLJ42627 PDPK1 PRSS27 PRSS21 TCEB2 MIR3178 ERVK13-1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ATP6V0C TBC1D24 FLJ42627 PDPK1 LOC652276 CEMP1 MIR3178 AMDHD2 ERVK13-1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain CEMP1 ECI1 C16orf59 MIR6767 MIR940 AMDHD2 LOC729652 ABCA17P TBC1D24 MIR6511B1 MIR3677 CCNF RAB26 DNASE1L2 E4F1 PGP BRICD5 SNORD60 CASKIN1 LOC652276 MIR3180-5 TSC2 MIR6768 MLST8 LOC106660606 ATP6V0C RNPS1 MIR4516 MIR1225 PDPK1 ABCA3 NTN3 TRAF7 MIR4717 LOC105371049 MIR3178 PKD1 SNHG19
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss FLJ42627 PDPK1 PRSS27 LOC652276 SRRM2 SRRM2-AS1 KCTD5 ERVK13-1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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