Hs03937113_cn

• Gene Symbol: RAB11FIP3
• Assay Reference Genome Location: Chr.16:455990 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 9727
• Gene Name: RAB11 family interacting protein 3
• Gene Aliases: CART1, Rab11-FIP3
• Location: Chr.16:425621-522485 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RAB11FIP3	NM_014700.3			NP_055515.1
	XM_005255713.3			XP_005255770.1
	XM_005255717.3			XP_005255774.1
	XM_005255718.3			XP_005255775.1
	XM_017023907.1			XP_016879396.1
	AB014565.1
	AF395731.1			AAL12940.1
	BC051360.1			AAH51360.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	SSTR5 E4F1 LOC105371047 HBA1 SPSB3 FAM234A RHBDL1 LOC652276 DNASE1L2 NME3 RAB11FIP3 MCRIP2 MIR6511B1 MIR940 SOX8 NME4 HAGHL LINC00235 LOC107987233 STUB1 SNHG19 RHBDF1 PTX4 METRN MIR5587 MPG MAPK8IP3 LOC105371038 HBM LOC105371046 FAM173A ERVK13-1 SSTR5-AS1 JMJD8 LOC107984876 WDR24 BRICD5 TMEM204 POLR3K CRAMP1 WASIR2 UBE2I TMEM8A TBC1D24 MIR6859-4 SYNGR3 RNF151 LOC101929280 ABCA17P RPL23AP5 TPSB2 RPUSD1 MSRB1 CACNA1H MIR4516 RGS11 LOC105371049 IGFALS LOC100134368 MIR3180-5 HAGH TPSAB1 IFT140 FLJ42627 MIR3677 MLST8 MIR6767 EME2 TRAF7 LOC106660606 MIR3178 MEIOB MRPS34 TSR3 GNPTG TELO2 MIR3177 SNORD60 WDR90 LMF1 HN1L MIR6768 NOXO1 SNRNP25 C1QTNF8 AXIN1 KCTD5 RNPS1 ECI1 CCDC154 MIR662 HBA2 CCNF NHLRC4 LOC105371045 ARHGDIG TPSD1 HBQ1 TSC2 SNORA10 PDIA2 RPS2 MRPL28 SNORA78 HBZ PRR35 GFER NTHL1 PKD1 RHOT2 SNHG9 AMDHD2 C16orf59 WFIKKN1 RAB40C FAHD1 LOC100287175 MIR1225 LMF1-AS1 ABCA3 LUC7L C16orf91 TPSG1 PRSS29P NDUFB10 NARFL RAB26 CCDC78 METTL26 DECR2 PIGQ CEMP1 PRSS27 RPL3L CHTF18 NPRL3 HS3ST6 ATP6V0C UNKL PRR25 SLC9A3R2 GNG13 CASKIN1 ZNF598 NUBP2 MIR3176 DDX11L10 CLCN7 MSLN FBXL16 TBL3 LOC729652 NTN3 CAPN15 BAIAP3 SNORA64 PGP PDPK1 LOC105371184 NPW LINC00254 MIR4717
esv3637563	Chr.16:263248 - 505590 on Build GRCh38	Gain	MRPL28 RAB11FIP3 TMEM8A RGS11 NME4 FAM234A ARHGDIG DECR2 RPL23AP5 LOC100134368 AXIN1 PDIA2
esv3637576	Chr.16:439034 - 480097 on Build GRCh38	Gain	RAB11FIP3
nsv528354	Chr.16:451362 - 605686 on Build GRCh38	Loss	LINC00235 LOC107987233 RAB11FIP3 CAPN15 RAB40C MIR3176 PRR35 NHLRC4 LOC101929280 MIR5587 PIGQ
nsv570954	Chr.16:342461 - 530124 on Build GRCh38	Loss	LINC00235 MRPL28 RAB11FIP3 CAPN15 TMEM8A NME4 DECR2 RPL23AP5 LOC100134368 AXIN1
dgv32n68	Chr.16:245507 - 476226 on Build GRCh38	Loss	MRPL28 RAB11FIP3 TMEM8A RGS11 NME4 FAM234A ARHGDIG DECR2 RPL23AP5 LOC100134368 AXIN1 PDIA2
esv1003529	Chr.16:455611 - 459074 on Build GRCh38	Insertion	RAB11FIP3

More Information

Additional Information:

For this assay, SNP(s) [rs78450122] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokinesis
vesicle-mediated transport
endocytic recycling
protein localization to cilium
negative regulation of adiponectin secretion

Function(s)

calcium ion binding
protein binding
Rab GTPase binding
ADP-ribosylation factor binding
protein homodimerization activity
dynein light intermediate chain binding