Hs03937113_cn

• Gene Symbol: RAB11FIP3
• Assay Reference Genome Location: Chr.16:455990 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 9727
• Gene Name: RAB11 family interacting protein 3
• Gene Aliases: CART1, Rab11-FIP3
• Location: Chr.16:425621-522485 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RAB11FIP3	NM_014700.3			NP_055515.1
	XM_005255713.3			XP_005255770.1
	XM_005255717.3			XP_005255774.1
	XM_005255718.3			XP_005255775.1
	XM_017023907.1			XP_016879396.1
	AB014565.1
	AF395731.1			AAL12940.1
	BC051360.1			AAH51360.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	MIR6767 TRAF7 HBA1 ZNF598 MIR3178 TPSAB1 GNPTG METRN LOC729652 C16orf91 TSR3 CAPN15 MIR3177 UNKL MIR3677 TELO2 RPS2 LOC105371184 TBC1D24 METTL26 RHBDF1 TPSD1 TPSB2 SNORA78 RNPS1 MIR662 MSRB1 SOX8 NTN3 SNORA10 STUB1 LOC652276 HN1L LOC107987233 NPRL3 CCDC78 MIR6511B1 MIR940 LOC106660606 MIR6859-4 MRPS34 ECI1 MIR3180-5 NARFL NHLRC4 RGS11 SLC9A3R2 HBM NTHL1 C1QTNF8 JMJD8 HBA2 SNHG19 PRR25 LINC00254 LOC107984876 MAPK8IP3 SYNGR3 TMEM204 PRR35 POLR3K HAGH NME3 MRPL28 BAIAP3 MIR3176 DECR2 WDR24 C16orf59 HBQ1 RNF151 GNG13 GFER LOC101929280 LOC105371038 LUC7L AMDHD2 PTX4 LOC105371049 MEIOB DNASE1L2 RAB40C PDIA2 RPL3L E4F1 WDR90 TMEM8A RAB26 LOC105371045 ERVK13-1 NUBP2 PKD1 PDPK1 CCNF RPL23AP5 FAM173A LOC100287175 PRSS27 SNRNP25 CHTF18 LOC100134368 MIR1225 HAGHL CLCN7 ATP6V0C TBL3 WASIR2 LOC105371046 ABCA17P FAM234A ABCA3 PRSS29P TPSG1 MSLN RHBDL1 NPW LOC105371047 NME4 LMF1-AS1 SNHG9 SNORA64 UBE2I CASKIN1 MLST8 PGP BRICD5 MIR6768 RHOT2 LMF1 FLJ42627 AXIN1 DDX11L10 RPUSD1 FAHD1 SSTR5 CEMP1 MIR4516 SSTR5-AS1 IFT140 CRAMP1 MIR4717 CCDC154 HS3ST6 CACNA1H TSC2 NOXO1 MCRIP2 HBZ FBXL16 LINC00235 IGFALS SNORD60 NDUFB10 ARHGDIG EME2 SPSB3 KCTD5 RAB11FIP3 MPG MIR5587 PIGQ WFIKKN1
esv3637576	Chr.16:439034 - 480097 on Build GRCh38	Gain	RAB11FIP3
esv3637563	Chr.16:263248 - 505590 on Build GRCh38	Gain	TMEM8A RGS11 ARHGDIG RPL23AP5 MRPL28 RAB11FIP3 PDIA2 FAM234A DECR2 NME4 LOC100134368 AXIN1
nsv526903	Chr.16:451362 - 810673 on Build GRCh38	Loss	CCDC78 METRN RHOT2 RAB40C NARFL NHLRC4 CAPN15 WDR90 RPUSD1 LOC105371184 METTL26 JMJD8 PRR25 FAM173A LOC100287175 CHTF18 PRR35 HAGHL MCRIP2 MIR3176 MIR662 WDR24 FBXL16 LINC00235 MSLN RHBDL1 GNG13 STUB1 RAB11FIP3 LOC107987233 LOC101929280 MIR5587 PIGQ LOC105371038 WFIKKN1
nsv570954	Chr.16:342461 - 530124 on Build GRCh38	Loss	LINC00235 TMEM8A RPL23AP5 MRPL28 RAB11FIP3 DECR2 NME4 LOC100134368 AXIN1 CAPN15
esv1003529	Chr.16:455611 - 459074 on Build GRCh38	Insertion	RAB11FIP3
dgv32n68	Chr.16:245507 - 476226 on Build GRCh38	Loss	TMEM8A RGS11 ARHGDIG RPL23AP5 MRPL28 RAB11FIP3 PDIA2 FAM234A DECR2 NME4 LOC100134368 AXIN1

More Information

Additional Information:

For this assay, SNP(s) [rs78450122] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokinesis
vesicle-mediated transport
endocytic recycling
protein localization to cilium
negative regulation of adiponectin secretion

Function(s)

calcium ion binding
protein binding
Rab GTPase binding
ADP-ribosylation factor binding
protein homodimerization activity
dynein light intermediate chain binding