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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89759862 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03937406_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
XM_017023045.1 XP_016878534.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC105371419 LOC107984817 ZNF276 FANCA TCF25 SPIRE2
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L LOC105371419 VPS9D1 VPS9D1-AS1 SPATA33 MC1R CHMP1A AFG3L1P TUBB3 LOC107984817 ZNF276 CDK10 GAS8-AS1 DBNDD1 FANCA TCF25 DEF8 SPIRE2 CENPBD1 DPEP1 GAS8
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA2L LOC105371419 LOC107984817 ZNF276 CDK10 VPS9D1 VPS9D1-AS1 SPATA33 FANCA SPIRE2
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SPATA2L SPG7 ZNF778 LOC105371419 VPS9D1 VPS9D1-AS1 CHMP1A ANKRD11 PRDM7 SNORD68 LOC101927817 DBNDD1 FANCA CENPBD1 URAHP DPEP1 GAS8 LOC100287036 CPNE7 SPATA33 MC1R AFG3L1P TUBB3 LOC107984817 ZNF276 CDK10 FAM157C LOC105371414 GAS8-AS1 TUBB8P7 TCF25 DEF8 SPIRE2 RPL13
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 LOC107984817 ZNF276 FANCA SPIRE2
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss PIEZO1 SPG7 ZNF778 LOC105371419 VPS9D1 IL17C GALNS VPS9D1-AS1 LOC105371409 CHMP1A SNAI3-AS1 LOC400558 LOC107987238 TRAPPC2L RNF166 FANCA URAHP DPEP1 GAS8 LOC100289580 MVD CPNE7 SPATA33 MC1R TUBB3 LOC107984817 ZNF276 LINC00304 CDT1 LOC105371414 CYBA PABPN1L TCF25 RPL13 SPATA2L MIR4722 ANKRD11 LOC339059 LOC101927793 SLC22A31 PRDM7 SNORD68 LOC101927817 DBNDD1 CENPBD1 LOC100129697 SNAI3 LOC100287036 CDH15 AFG3L1P CBFA2T3 CDK10 FAM157C APRT GAS8-AS1 TUBB8P7 DEF8 CTU2 SPIRE2 ACSF3
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA2L SPG7 VPS9D1 VPS9D1-AS1 CPNE7 SPATA33 CHMP1A ZNF276 CDK10 SNORD68 FANCA DPEP1 RPL13

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