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See other CBFA2T3 CNV Assays ›
Gene Symbol
CBFA2T3
Assay Reference Genome
Location

Chr.16:88888298 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03938920_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 863

Gene Name:

 CBFA2/RUNX1 translocation partner 3

Gene Aliases:

 ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4

Location:

 Chr.16:88874855-88977198 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CBFA2T3 NM_005187.5 NP_005178.4
NM_175931.2 NP_787127.1
XM_005256323.4 XP_005256380.1
XM_011523419.2 XP_011521721.1
XM_017023811.1 XP_016879300.1
AB010419.1 BAA29061.1
AB010420.1 BAA29062.1
AK308355.1
AK314766.1
BC047019.1
BC062624.1 AAH62624.1
BE676580.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss GALNS PIEZO1 PABPN1L LOC101927793 LOC107987238 CBFA2T3 APRT TRAPPC2L CDT1 LOC100129697 LOC105371409
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain GALNS PIEZO1 LOC107987238 ACSF3 CBFA2T3 ZNF778 LOC339059 APRT TRAPPC2L MIR4722 LOC100129697 PABPN1L LOC101927793 LINC00304 LOC100289580 CDH15 CDT1 SLC22A31 CTU2 LOC400558 LOC105371409
nsv1928 Chr.16:88865211 - 88897277 on Build GRCh38 Insertion PABPN1L LOC101927793 CBFA2T3
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss GALNS LOC107987238 ACSF3 CBFA2T3 APRT TRAPPC2L LOC100129697 PABPN1L LOC101927793 LINC00304 CDH15 CDT1 SLC22A31 LOC400558 LOC105371409
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain GALNS PIEZO1 LOC107987238 ACSF3 CBFA2T3 ZNF778 LOC100287036 LOC339059 APRT TRAPPC2L LOC100129697 PABPN1L LOC101927793 LINC00304 LOC105371414 LOC100289580 CDH15 CDT1 ANKRD11 SLC22A31 LOC400558 LOC105371409
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain GALNS PIEZO1 PABPN1L LOC101927793 LOC107987238 CBFA2T3 APRT TRAPPC2L CDT1
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion GALNS PABPN1L LOC101927793 LOC107987238 CBFA2T3 APRT TRAPPC2L CDT1 LOC100129697 LOC105371409
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss GALNS LOC107987238 ACSF3 CBFA2T3 APRT TRAPPC2L LOC100129697 PABPN1L LOC101927793 LINC00304 CDH15 CDT1 LOC400558 LOC105371409
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss PIEZO1 FANCA SPIRE2 LOC107987238 SPATA2L LOC100287036 CYBA TRAPPC2L LINC00304 CDK10 LOC100289580 FAM157C LOC400558 LOC105371409 MIR4722 LOC100129697 TUBB8P7 CENPBD1 CDH15 DEF8 DBNDD1 TUBB3 IL17C AFG3L1P MVD SNORD68 GAS8 CPNE7 ACSF3 CHMP1A GAS8-AS1 LOC339059 APRT MC1R VPS9D1 SNAI3 LOC105371419 PABPN1L LOC101927793 TCF25 LOC107984817 ANKRD11 SLC22A31 GALNS VPS9D1-AS1 CBFA2T3 ZNF778 SPG7 RPL13 PRDM7 LOC105371414 SPATA33 SNAI3-AS1 URAHP ZNF276 LOC101927817 DPEP1 RNF166 CDT1 CTU2
nsv1061256 Chr.16:88711587 - 89013365 on Build GRCh38 Gain GALNS PIEZO1 LOC107987238 CBFA2T3 LOC339059 APRT TRAPPC2L MIR4722 LOC100129697 PABPN1L LOC101927793 LOC100289580 CDT1 CTU2 LOC105371409

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More Information


Additional Information:

For this assay, SNP(s) [rs149166340] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Function(s) Process(es)


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