Hs03940439_cn

• Gene Symbol: RAB11FIP3
• Assay Reference Genome Location: Chr.16:457224 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 9727
• Gene Name: RAB11 family interacting protein 3
• Gene Aliases: CART1, Rab11-FIP3
• Location: Chr.16:425621-522485 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RAB11FIP3	NM_014700.3			NP_055515.1
	XM_005255713.3			XP_005255770.1
	XM_005255717.3			XP_005255774.1
	XM_005255718.3			XP_005255775.1
	XM_017023907.1			XP_016879396.1
	AB014565.1
	AF395731.1			AAL12940.1
	BC051360.1			AAH51360.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	HBZ IFT140 EME2 DECR2 LOC652276 ZNF598 SYNGR3 FLJ42627 CAPN15 AMDHD2 LOC105371046 GNPTG PDPK1 LUC7L FAM173A NME3 MIR4717 MIR3178 CCNF NPW MIR662 FBXL16 NOXO1 NUBP2 AXIN1 MSLN PKD1 PRSS27 CLCN7 MIR1225 TPSG1 LOC105371047 TBL3 BRICD5 LINC00235 RNF151 CRAMP1 WFIKKN1 MIR6767 SNORA78 PIGQ C16orf91 PRSS29P PRR25 HAGHL TRAF7 NARFL MIR3180-5 SSTR5 STUB1 MIR5587 PDIA2 RPUSD1 MIR4516 KCTD5 RAB11FIP3 HBM NHLRC4 RHBDL1 MLST8 LOC105371049 BAIAP3 LINC00254 LOC101929280 HBQ1 RPS2 CHTF18 MIR6859-4 SSTR5-AS1 NPRL3 LOC105371184 TMEM204 JMJD8 C16orf59 WASIR2 NDUFB10 RPL3L GNG13 RHBDF1 GFER FAHD1 LOC105371038 MRPS34 LMF1 MIR940 SNRNP25 RAB26 ATP6V0C RGS11 TPSB2 METTL26 MSRB1 RPL23AP5 ECI1 MAPK8IP3 CCDC78 NME4 MIR6511B1 SNHG19 LOC106660606 TBC1D24 LOC729652 SNORA64 LOC100287175 MIR6768 HBA1 PTX4 DDX11L10 HBA2 HS3ST6 MIR3176 ARHGDIG MIR3677 TPSAB1 MEIOB LMF1-AS1 UNKL LOC107987233 E4F1 RNPS1 MCRIP2 SNORA10 HAGH PGP POLR3K ABCA17P SPSB3 TMEM8A ERVK13-1 DNASE1L2 NTHL1 UBE2I HN1L CCDC154 METRN MRPL28 IGFALS SLC9A3R2 C1QTNF8 ABCA3 CACNA1H TELO2 SOX8 WDR24 SNHG9 LOC105371045 CASKIN1 MPG LOC107984876 FAM234A MIR3177 WDR90 RAB40C SNORD60 CEMP1 TPSD1 RHOT2 NTN3 TSC2 LOC100134368 PRR35 TSR3
esv3637563	Chr.16:263248 - 505590 on Build GRCh38	Gain	AXIN1 PDIA2 DECR2 TMEM8A RGS11 RAB11FIP3 RPL23AP5 ARHGDIG MRPL28 LOC100134368 NME4 FAM234A
esv3637576	Chr.16:439034 - 480097 on Build GRCh38	Gain	RAB11FIP3
nsv528354	Chr.16:451362 - 605686 on Build GRCh38	Loss	RAB40C CAPN15 LINC00235 MIR5587 LOC107987233 RAB11FIP3 LOC101929280 MIR3176 PRR35 PIGQ NHLRC4
nsv570954	Chr.16:342461 - 530124 on Build GRCh38	Loss	AXIN1 CAPN15 LINC00235 DECR2 TMEM8A RAB11FIP3 RPL23AP5 MRPL28 LOC100134368 NME4
dgv32n68	Chr.16:245507 - 476226 on Build GRCh38	Loss	AXIN1 PDIA2 DECR2 TMEM8A RGS11 RAB11FIP3 RPL23AP5 ARHGDIG MRPL28 LOC100134368 NME4 FAM234A
esv1003529	Chr.16:455611 - 459074 on Build GRCh38	Insertion	RAB11FIP3

More Information

Additional Information:

For this assay, SNP(s) [rs76662672] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokinesis
vesicle-mediated transport
endocytic recycling
protein localization to cilium
negative regulation of adiponectin secretion

Function(s)

calcium ion binding
protein binding
Rab GTPase binding
ADP-ribosylation factor binding
protein homodimerization activity
dynein light intermediate chain binding