Hs03941284_cn

• Gene Symbol: PABPN1L
• Assay Reference Genome Location: Chr.16:88866335 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 390748
• Gene Name: poly(A) binding protein nuclear 1 like (cytoplasmic)
• Gene Aliases: PABPNL1, ePABP2
• Location: Chr.16:88862623-88870152 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PABPN1L	NM_001080487.2			NP_001073956.2
	NM_001294328.1			NP_001281257.1
	XM_017023230.1			XP_016878719.1
	BC130001.1
	BC130002.1
	EU190484.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	LOC105371409 TRAPPC2L PIEZO1 CDT1 LOC100129697 PABPN1L GALNS APRT LOC107987238 LOC101927793 CBFA2T3
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	TRAPPC2L PIEZO1 LINC00304 PABPN1L GALNS APRT SLC22A31 LOC101927793 CBFA2T3 LOC339059 MIR4722 LOC105371409 CDH15 ACSF3 LOC100289580 CDT1 LOC100129697 LOC107987238 LOC400558 CTU2 ZNF778
nsv1928	Chr.16:88865211 - 88897277 on Build GRCh38	Insertion	PABPN1L LOC101927793 CBFA2T3
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	TRAPPC2L LINC00304 PABPN1L GALNS APRT SLC22A31 LOC101927793 CBFA2T3 LOC105371409 CDH15 ACSF3 CDT1 LOC100129697 LOC107987238 LOC400558
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	TRAPPC2L PIEZO1 LINC00304 LOC100287036 PABPN1L GALNS APRT SLC22A31 LOC101927793 CBFA2T3 LOC339059 LOC105371409 CDH15 ANKRD11 LOC105371414 ACSF3 LOC100289580 CDT1 LOC100129697 LOC107987238 LOC400558 ZNF778
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	TRAPPC2L PIEZO1 CDT1 PABPN1L GALNS APRT LOC107987238 LOC101927793 CBFA2T3
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	TRAPPC2L LINC00304 PABPN1L GALNS APRT LOC101927793 CBFA2T3 LOC105371409 CDH15 ACSF3 CDT1 LOC100129697 LOC107987238 LOC400558
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	LOC105371409 TRAPPC2L CDT1 LOC100129697 PABPN1L GALNS APRT LOC107987238 LOC101927793 CBFA2T3
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	CENPBD1 TRAPPC2L FAM157C PABPN1L SPATA2L LOC105371414 ACSF3 SNAI3 LOC107987238 LOC400558 TCF25 ZNF778 SPIRE2 TUBB8P7 TUBB3 ZNF276 GAS8-AS1 RPL13 CBFA2T3 RNF166 DEF8 MIR4722 IL17C VPS9D1 LOC100289580 DBNDD1 SNAI3-AS1 CPNE7 GAS8 PRDM7 VPS9D1-AS1 PIEZO1 DPEP1 SPATA33 LOC100287036 GALNS SNORD68 LOC107984817 LOC339059 MC1R LOC105371409 CHMP1A FANCA AFG3L1P CDT1 MVD LOC100129697 URAHP CYBA LOC105371419 CDK10 LINC00304 APRT SLC22A31 LOC101927793 LOC101927817 SPG7 CDH15 ANKRD11 CTU2
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	TRAPPC2L PABPN1L GALNS CBFA2T3
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	TRAPPC2L PIEZO1 PABPN1L GALNS APRT LOC101927793 CBFA2T3 LOC339059 MIR4722 LOC100289580 CDT1 LOC107987238 CTU2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

translation initiation factor

Gene Ontology Categories:

Function(s)

nucleotide binding
RNA binding