Hs03941284_cn

• Gene Symbol: PABPN1L
• Assay Reference Genome Location: Chr.16:88866335 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 390748
• Gene Name: poly(A) binding protein nuclear 1 like (cytoplasmic)
• Gene Aliases: PABPNL1, ePABP2
• Location: Chr.16:88862623-88870152 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PABPN1L	NM_001080487.2			NP_001073956.2
	NM_001294328.1			NP_001281257.1
	XM_017023230.1			XP_016878719.1
	BC130001.1
	BC130002.1
	EU190484.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	TRAPPC2L LOC101927793 PIEZO1 PABPN1L LOC105371409 CBFA2T3 LOC100129697 LOC107987238 GALNS APRT CDT1
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	TRAPPC2L PIEZO1 ACSF3 LINC00304 LOC100289580 LOC100129697 CTU2 LOC107987238 MIR4722 LOC400558 APRT CDH15 ZNF778 LOC101927793 PABPN1L SLC22A31 LOC105371409 CBFA2T3 LOC339059 GALNS CDT1
nsv1928	Chr.16:88865211 - 88897277 on Build GRCh38	Insertion	LOC101927793 PABPN1L CBFA2T3
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	TRAPPC2L ACSF3 LINC00304 LOC100129697 LOC107987238 LOC400558 APRT CDH15 LOC101927793 PABPN1L SLC22A31 LOC105371409 CBFA2T3 GALNS CDT1
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	TRAPPC2L PIEZO1 ACSF3 LINC00304 ANKRD11 LOC100289580 LOC100129697 LOC105371414 LOC107987238 LOC400558 APRT CDH15 ZNF778 LOC101927793 PABPN1L SLC22A31 LOC105371409 CBFA2T3 LOC339059 GALNS LOC100287036 CDT1
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	TRAPPC2L LOC101927793 PIEZO1 PABPN1L CBFA2T3 LOC107987238 GALNS APRT CDT1
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	TRAPPC2L LOC101927793 PABPN1L LOC105371409 CBFA2T3 LOC100129697 LOC107987238 GALNS APRT CDT1
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	TRAPPC2L ACSF3 LINC00304 LOC100129697 LOC107987238 LOC400558 APRT CDH15 LOC101927793 PABPN1L LOC105371409 CBFA2T3 GALNS CDT1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	CDK10 ACSF3 SNAI3-AS1 LOC100129697 MIR4722 APRT CDH15 SNAI3 LOC101927793 PABPN1L MC1R SLC22A31 AFG3L1P TUBB3 TCF25 SPATA33 CDT1 TRAPPC2L DEF8 LINC00304 ZNF276 CTU2 LOC107987238 CYBA GAS8-AS1 LOC107984817 CBFA2T3 PRDM7 IL17C LOC101927817 GALNS LOC100287036 PIEZO1 CHMP1A VPS9D1 VPS9D1-AS1 DBNDD1 MVD LOC100289580 LOC105371419 ZNF778 RNF166 LOC339059 FAM157C FANCA SNORD68 TUBB8P7 CPNE7 ANKRD11 LOC105371414 CENPBD1 LOC400558 SPIRE2 DPEP1 LOC105371409 SPG7 RPL13 GAS8 SPATA2L URAHP
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	TRAPPC2L PABPN1L CBFA2T3 GALNS
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	TRAPPC2L PIEZO1 LOC100289580 LOC100129697 CTU2 LOC107987238 MIR4722 APRT LOC101927793 PABPN1L LOC105371409 CBFA2T3 LOC339059 GALNS CDT1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

translation initiation factor

Gene Ontology Categories:

Function(s)

nucleotide binding
RNA binding