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See other SPSB3 CNV Assays ›
Gene Symbol
SPSB3
Assay Reference Genome
Location

Chr.16:1779727 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03942411_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 90864

Gene Name:

 splA/ryanodine receptor domain and SOCS box containing 3

Gene Aliases:

 C16orf31, SSB3

Location:

 Chr.16:1776712-1782605 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPSB3 NM_001324081.1 NP_001311010.1
NM_080861.3 NP_543137.2
XM_005255673.4 XP_005255730.1
AF403028.1 AAL57347.1
AK074190.1
AK302041.1
BC007588.1
BC024244.1 AAH24244.1
BC041897.1 AAH41897.1
BC047441.1
BI768095.1
BM836743.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571169 Chr.16:1729694 - 1789022 on Build GRCh38 Loss EME2 SPSB3 MAPK8IP3 MIR3177 MRPS34 NME3 NUBP2
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SSTR5-AS1 SLC9A3R2 LMF1 SNHG19 MIR3177 RAB11FIP3 CEMP1 BRICD5 SNORA64 LOC107984876 LOC107987233 HS3ST6 SNHG9 SNORD60 SPSB3 IGFALS PRSS29P CASKIN1 HAGHL NME3 MSRB1 LOC652276 MIR6767 TPSD1 PDPK1 LOC729652 SNRNP25 SNORA10 NME4 FAM173A AXIN1 ERVK13-1 RGS11 GNG13 CLCN7 CACNA1H E4F1 MIR4717 ATP6V0C SNORA78 GFER METTL26 FBXL16 RPS2 STUB1 ABCA3 DNASE1L2 LOC105371049 LOC100287175 CRAMP1 MAPK8IP3 LINC00235 SOX8 WASIR2 ABCA17P POLR3K PIGQ PTX4 LOC101929280 ARHGDIG LOC105371047 MIR6859-4 C16orf59 RHBDL1 FAM234A RAB40C LOC106660606 SSTR5 NHLRC4 LOC105371046 HBA1 RPUSD1 FAHD1 ECI1 UBE2I LOC100134368 RNF151 TPSAB1 NOXO1 TMEM8A EME2 RPL3L MIR5587 DECR2 MRPL28 MRPS34 JMJD8 RNPS1 MPG TBC1D24 PKD1 NTN3 NPW MIR662 HBZ BAIAP3 NDUFB10 LOC105371045 C16orf91 IFT140 LUC7L TSC2 NARFL MIR3178 WDR24 PRSS27 MLST8 RHBDF1 MEIOB CCDC78 LOC105371038 MIR3677 MSLN CAPN15 RAB26 HBA2 C1QTNF8 LINC00254 TSR3 LMF1-AS1 NPRL3 RPL23AP5 UNKL MIR1225 PRR25 TPSG1 TBL3 TMEM204 TRAF7 LOC105371184 DDX11L10 KCTD5 MIR4516 FLJ42627 WDR90 RHOT2 CHTF18 MCRIP2 TPSB2 HBM CCNF GNPTG TELO2 HAGH PRR35 METRN ZNF598 MIR6511B1 MIR940 NTHL1 HN1L HBQ1 AMDHD2 CCDC154 PDIA2 MIR6768 MIR3180-5 SYNGR3 MIR3176 PGP WFIKKN1 NUBP2
nsv571172 Chr.16:1764390 - 1817039 on Build GRCh38 Loss EME2 SPSB3 MAPK8IP3 IGFALS MRPS34 NME3 HAGH NUBP2
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion EME2 SPSB3 MAPK8IP3 IGFALS MIR3177 MRPS34 NME3 NUBP2
nsv571171 Chr.16:1757779 - 1804539 on Build GRCh38 Gain+Loss EME2 SPSB3 MAPK8IP3 IGFALS MRPS34 NME3 NUBP2
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss LOC105371046 EME2 CRAMP1 MAPK8IP3 MIR3177 MRPS34 HAGH HN1L SPSB3 IGFALS IFT140 NME3 NUBP2
nsv471069 Chr.16:1754356 - 1791032 on Build GRCh38 Loss EME2 SPSB3 MAPK8IP3 IGFALS MRPS34 NME3 NUBP2
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss LOC105371046 EME2 TELO2 CRAMP1 MAPK8IP3 MIR3177 MRPS34 MEIOB HAGH FAHD1 LOC105371047 TMEM204 HN1L SPSB3 IGFALS IFT140 NME3 NUBP2
nsv827500 Chr.16:1761258 - 1795126 on Build GRCh38 Gain EME2 SPSB3 MAPK8IP3 IGFALS MRPS34 NME3 NUBP2
nsv571173 Chr.16:1767596 - 1780436 on Build GRCh38 Loss EME2 SPSB3 MAPK8IP3 MRPS34 NME3
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss EME2 CRAMP1 MAPK8IP3 MIR3177 MRPS34 MEIOB HAGH FAHD1 HN1L SPSB3 IGFALS NME3 NUBP2
nsv457336 Chr.16:1752231 - 1791032 on Build GRCh38 Loss EME2 SPSB3 MAPK8IP3 IGFALS MRPS34 NME3 NUBP2
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion EME2 SPSB3 MAPK8IP3 IGFALS MIR3177 MRPS34 NME3 HAGH FAHD1 NUBP2

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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