Hs03942536_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1783479 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv457335	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	MIR3177 MAPK8IP3 NME3 NUBP2 MRPS34 EME2 SPSB3
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	MIR3177 MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 LOC105371046 EME2 IFT140 HAGH HN1L CRAMP1 SPSB3
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	KCTD5 WFIKKN1 SNORA10 IGFALS E4F1 MSRB1 SNORA78 LMF1-AS1 PRR25 TPSAB1 MIR3178 MIR3176 CRAMP1 WDR24 NOXO1 NTHL1 MIR1225 TPSD1 LMF1 MAPK8IP3 ERVK13-1 CACNA1H FAM234A TSR3 LOC107987233 PRSS29P LOC729652 JMJD8 MIR3180-5 NME4 WDR90 CCDC78 LOC100287175 HBM TBL3 DECR2 MIR6768 PGP MSLN RHBDF1 FAHD1 NDUFB10 LINC00235 MLST8 SNRNP25 C1QTNF8 SOX8 RPUSD1 MIR662 RPL23AP5 MIR4717 TSC2 SNHG19 LOC105371046 LUC7L CEMP1 AMDHD2 C16orf91 RAB40C TPSG1 TBC1D24 LOC101929280 SSTR5-AS1 RGS11 BAIAP3 NARFL LINC00254 MIR4516 TPSB2 UBE2I C16orf59 CHTF18 CCNF RNF151 MRPL28 MRPS34 PTX4 LOC105371045 IFT140 RPL3L SNORD60 NTN3 NPRL3 ECI1 MCRIP2 CAPN15 MIR940 LOC105371184 AXIN1 STUB1 LOC100134368 ATP6V0C RAB11FIP3 CLCN7 SLC9A3R2 PDIA2 ABCA3 METRN POLR3K FAM173A TMEM8A ABCA17P HS3ST6 PRR35 LOC105371038 NPW DNASE1L2 BRICD5 MIR3677 CCDC154 LOC107984876 HBA1 CASKIN1 SPSB3 HBA2 MPG MIR5587 MIR3177 LOC105371049 DDX11L10 FLJ42627 NUBP2 SNHG9 LOC652276 EME2 ARHGDIG GNG13 FBXL16 LOC106660606 HN1L NHLRC4 PKD1 METTL26 RHBDL1 PDPK1 GNPTG HAGHL ZNF598 RPS2 TRAF7 SNORA64 SYNGR3 LOC105371047 GFER TMEM204 WASIR2 RAB26 SSTR5 NME3 MEIOB HBZ MIR6767 RNPS1 HAGH MIR6859-4 PRSS27 RHOT2 UNKL HBQ1 PIGQ MIR6511B1 TELO2
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 EME2 SPSB3
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	MIR3177 MAPK8IP3 NME3 MEIOB IGFALS NUBP2 MRPS34 LOC105371046 EME2 IFT140 HAGH HN1L FAHD1 LOC105371047 CRAMP1 TMEM204 SPSB3 TELO2
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 EME2 SPSB3 HAGH
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	MIR3177 MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 EME2 SPSB3
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 EME2 SPSB3
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 EME2 SPSB3
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	MIR3177 MAPK8IP3 NME3 MEIOB IGFALS NUBP2 MRPS34 EME2 HAGH HN1L FAHD1 CRAMP1 SPSB3
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	MIR3177 FAHD1 MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 EME2 SPSB3 HAGH
nsv571170	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	MAPK8IP3 NME3 IGFALS NUBP2 MRPS34 EME2 SPSB3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding