Hs03942536_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1783479 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv571169	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	MIR3177 NUBP2 MRPS34 NME3 SPSB3 MAPK8IP3 EME2
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	HN1L MIR3177 IGFALS HAGH SPSB3 CRAMP1 MAPK8IP3 NUBP2 IFT140 MRPS34 NME3 LOC105371046 EME2
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	NUBP2 IGFALS MRPS34 NME3 SPSB3 MAPK8IP3 EME2
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	FAM173A TSC2 LOC105371184 MIR1225 HN1L NTHL1 LMF1-AS1 PGP TSR3 RNF151 CAPN15 ARHGDIG MIR3178 FBXL16 CLCN7 CCDC78 LINC00235 RPS2 AXIN1 HBM TPSG1 MSLN HBZ E4F1 C16orf59 MCRIP2 SNORA64 MIR3177 ERVK13-1 WDR90 POLR3K LOC107987233 NTN3 HBA2 MLST8 RPL3L SOX8 DNASE1L2 IFT140 LOC105371045 KCTD5 LOC100287175 PDPK1 HAGHL TELO2 DDX11L10 FAHD1 METRN NPW TBL3 SNORD60 LOC652276 MIR3176 SNHG9 RPUSD1 FLJ42627 MRPS34 MSRB1 GNG13 PRR25 PTX4 SSTR5-AS1 RPL23AP5 UBE2I UNKL PIGQ JMJD8 GFER TRAF7 NPRL3 CASKIN1 AMDHD2 MIR6511B1 RHBDL1 CCNF DECR2 MIR662 HS3ST6 MIR6767 TPSB2 ATP6V0C MIR6859-4 CHTF18 SNHG19 PKD1 PDIA2 MIR4717 SNORA10 LUC7L NUBP2 NME3 LMF1 SYNGR3 CEMP1 SNORA78 NOXO1 MPG MIR940 MIR3677 SPSB3 FAM234A LOC105371047 TBC1D24 NARFL STUB1 LINC00254 BAIAP3 LOC729652 CCDC154 RAB40C RAB11FIP3 LOC100134368 PRR35 RAB26 MIR6768 RHBDF1 MIR4516 METTL26 WASIR2 IGFALS TMEM204 RNPS1 PRSS27 NDUFB10 HAGH LOC105371049 ABCA17P WFIKKN1 MAPK8IP3 ABCA3 LOC106660606 RHOT2 MEIOB CACNA1H TPSD1 MIR5587 ZNF598 TMEM8A GNPTG SNRNP25 BRICD5 PRSS29P C16orf91 HBQ1 MIR3180-5 MRPL28 ECI1 RGS11 CRAMP1 SSTR5 NME4 HBA1 LOC105371038 C1QTNF8 LOC107984876 NHLRC4 LOC105371046 SLC9A3R2 LOC101929280 WDR24 TPSAB1 EME2
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	NUBP2 IGFALS MRPS34 NME3 HAGH SPSB3 MAPK8IP3 EME2
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	HN1L MIR3177 TELO2 FAHD1 IGFALS TMEM204 HAGH SPSB3 CRAMP1 MAPK8IP3 LOC105371047 MEIOB NUBP2 IFT140 MRPS34 NME3 LOC105371046 EME2
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	NUBP2 IGFALS MRPS34 NME3 SPSB3 MAPK8IP3 EME2
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	MIR3177 NUBP2 IGFALS MRPS34 NME3 SPSB3 MAPK8IP3 EME2
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	NUBP2 IGFALS MRPS34 NME3 SPSB3 MAPK8IP3 EME2
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	HN1L MIR3177 FAHD1 IGFALS HAGH SPSB3 CRAMP1 MAPK8IP3 MEIOB NUBP2 MRPS34 NME3 EME2
nsv457336	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	NUBP2 IGFALS MRPS34 NME3 SPSB3 MAPK8IP3 EME2
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	MIR3177 FAHD1 NUBP2 IGFALS MRPS34 NME3 HAGH SPSB3 MAPK8IP3 EME2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding