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See other SLC9A3R2 CNV Assays ›
Gene Symbol
SLC9A3R2
Assay Reference Genome
Location

Chr.16:2029558 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03945471_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9351

Gene Name:

 SLC9A3 regulator 2

Gene Aliases:

 E3KARP, NHE3RF2, NHERF-2, NHERF2, OCTS2, SIP-1, SIP1, TKA-1

Location:

 Chr.16:2026868-2039026 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC9A3R2 NM_001130012.2 NP_001123484.1
NM_004785.5 NP_004776.3
XM_017023895.1 XP_016879384.1
AF004900.1 AAC63061.1
AF035771.1 AAC52090.1
BC014513.1 AAH14513.2
BC069014.1 AAH69014.1
BC106001.1 AAI06002.1
DB495688.2
U82108.1 AAB53042.1
Z50150.1 CAA90511.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBQ1 GNG13 CCDC78 GFER MRPL28 SNHG19 C1QTNF8 FBXL16 CACNA1H RPL23AP5 TBL3 RAB11FIP3 MEIOB DECR2 SSTR5-AS1 UNKL SSTR5 MIR4516 HN1L TRAF7 BAIAP3 MIR3176 TMEM204 METTL26 AXIN1 CCNF NDUFB10 AMDHD2 NTHL1 LOC105371038 MIR3677 SNORA10 TPSAB1 SOX8 HAGH LOC100134368 SNRNP25 TBC1D24 LOC107984876 FAM173A TPSD1 NME4 ERVK13-1 TPSG1 STUB1 JMJD8 WFIKKN1 MPG LOC652276 PTX4 NARFL SNORA78 MRPS34 LOC105371184 MIR6768 ATP6V0C SNHG9 MSRB1 GNPTG SNORD60 PKD1 FAM234A HBA2 IFT140 EME2 PRR25 NTN3 NUBP2 MSLN MLST8 LMF1-AS1 SYNGR3 MIR6859-4 CAPN15 TMEM8A CEMP1 RPS2 LOC729652 C16orf59 MIR940 ABCA17P SNORA64 KCTD5 MIR6511B1 TPSB2 PDPK1 ARHGDIG NHLRC4 NPW PRR35 BRICD5 HBA1 HBM LINC00254 RHOT2 WDR90 WDR24 PRSS29P CASKIN1 CRAMP1 LOC105371045 RAB26 MIR4717 MIR3180-5 RNF151 RHBDF1 LOC106660606 CLCN7 POLR3K SLC9A3R2 LUC7L CHTF18 UBE2I SPSB3 WASIR2 E4F1 LOC107987233 MIR6767 PRSS27 DNASE1L2 RPL3L PGP LOC101929280 NME3 PDIA2 FLJ42627 CCDC154 MIR662 MIR5587 HS3ST6 LOC105371046 LMF1 LOC105371049 RHBDL1 TSR3 MIR3178 PIGQ MCRIP2 RAB40C MIR3177 MAPK8IP3 LINC00235 LOC105371047 TELO2 DDX11L10 HBZ C16orf91 NOXO1 FAHD1 ABCA3 MIR1225 IGFALS ZNF598 ECI1 TSC2 HAGHL RNPS1 NPRL3 RGS11 LOC100287175 METRN RPUSD1
nsv523037 Chr.16:1971892 - 2083900 on Build GRCh38 Loss TSC2 GFER SLC9A3R2 NPW ZNF598 SYNGR3 NTHL1 TBL3 NOXO1
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion RNF151 GFER MIR1225 SLC9A3R2 HS3ST6 NPW ZNF598 LOC105371049 NDUFB10 SYNGR3 NTHL1 TBL3 TSC2 SNORA10 SNORA78 RPL3L RPS2 SNHG9 SNORA64 MSRB1 MIR6511B1 MIR4516 PKD1 NOXO1
dgv4858n54 Chr.16:1955562 - 2038584 on Build GRCh38 Loss RNF151 GFER SLC9A3R2 NPW ZNF598 NDUFB10 SYNGR3 TBL3 SNORA10 SNORA78 RPS2 SNHG9 SNORA64 NOXO1
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion RNF151 GFER MIR1225 SLC9A3R2 NPW ZNF598 LOC105371049 NDUFB10 SYNGR3 NTHL1 TBL3 TSC2 SNORA10 SNORA78 RPS2 SNHG9 SNORA64 MIR6511B1 PKD1 NOXO1
dgv336n27 Chr.16:1965120 - 2038584 on Build GRCh38 Loss RNF151 SNORA78 GFER SLC9A3R2 NPW ZNF598 SNHG9 SYNGR3 TBL3 NOXO1
nsv457348 Chr.16:2004154 - 2037561 on Build GRCh38 Loss SLC9A3R2 NPW ZNF598

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More Information


Additional Information:

For this assay, SNP(s) [rs115604506] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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