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See other SLC9A3R2 CNV Assays ›
Gene Symbol
SLC9A3R2
Assay Reference Genome
Location

Chr.16:2029558 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03945471_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9351

Gene Name:

 SLC9A3 regulator 2

Gene Aliases:

 E3KARP, NHE3RF2, NHERF-2, NHERF2, OCTS2, SIP-1, SIP1, TKA-1

Location:

 Chr.16:2026868-2039026 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC9A3R2 NM_001130012.2 NP_001123484.1
NM_004785.5 NP_004776.3
XM_017023895.1 XP_016879384.1
AF004900.1 AAC63061.1
AF035771.1 AAC52090.1
BC014513.1 AAH14513.2
BC069014.1 AAH69014.1
BC106001.1 AAI06002.1
DB495688.2
U82108.1 AAB53042.1
Z50150.1 CAA90511.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RHBDF1 WASIR2 SPSB3 HS3ST6 MIR3180-5 TPSG1 LOC101929280 HN1L UNKL PDPK1 TPSAB1 NME3 MIR3178 TPSB2 MIR662 NPW EME2 ERVK13-1 LOC729652 IFT140 HBA1 MIR6767 MIR6859-4 SNHG9 TPSD1 MRPS34 GNPTG SNORD60 GFER HBM FBXL16 PRR35 CHTF18 NARFL CCDC154 NHLRC4 BRICD5 POLR3K CAPN15 LOC105371038 FAHD1 BAIAP3 IGFALS MAPK8IP3 MIR1225 TSR3 MLST8 PRSS29P PIGQ HBZ SNHG19 RNPS1 E4F1 CEMP1 PKD1 KCTD5 LOC105371046 ABCA17P TMEM204 SNORA64 PDIA2 LOC100134368 CRAMP1 RHBDL1 ABCA3 TBC1D24 NPRL3 MPG LOC105371184 SNRNP25 JMJD8 STUB1 HAGHL HBA2 FLJ42627 LOC105371045 LMF1 LUC7L AXIN1 C16orf59 SYNGR3 ZNF598 LOC107987233 RPL3L CLCN7 TBL3 METRN SLC9A3R2 CCNF TMEM8A NUBP2 METTL26 PRR25 CASKIN1 ATP6V0C LINC00254 CCDC78 DNASE1L2 UBE2I MIR3176 RAB11FIP3 NOXO1 C1QTNF8 GNG13 HBQ1 TELO2 MEIOB MIR4516 LOC105371047 MIR5587 ECI1 AMDHD2 LOC106660606 RHOT2 MIR3677 NTHL1 NME4 WFIKKN1 WDR24 RAB26 CACNA1H DDX11L10 LOC105371049 MIR940 LINC00235 MIR6511B1 MRPL28 LOC100287175 PGP RNF151 MCRIP2 MIR4717 MSLN TSC2 WDR90 PTX4 RPS2 SOX8 NDUFB10 RPL23AP5 SNORA10 LMF1-AS1 LOC107984876 PRSS27 ARHGDIG DECR2 SNORA78 RPUSD1 RAB40C NTN3 MIR6768 MIR3177 FAM234A FAM173A LOC652276 C16orf91 HAGH TRAF7 SSTR5-AS1 SSTR5 MSRB1 RGS11
nsv521569 Chr.16:1971892 - 2035996 on Build GRCh38 Loss TBL3 SLC9A3R2 NOXO1 SYNGR3 ZNF598 GFER NPW
dgv4858n54 Chr.16:1955562 - 2038584 on Build GRCh38 Loss SNORA64 SNORA10 NOXO1 SNHG9 SYNGR3 ZNF598 SNORA78 GFER TBL3 SLC9A3R2 RNF151 RPS2 NPW NDUFB10
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion SNORA64 SNORA10 NOXO1 MIR1225 HS3ST6 LOC105371049 SNHG9 SYNGR3 MIR4516 ZNF598 SNORA78 GFER RPL3L MIR6511B1 TBL3 SLC9A3R2 NTHL1 RNF151 PKD1 TSC2 RPS2 NPW NDUFB10 MSRB1
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion SNORA64 SNORA10 NOXO1 MIR1225 LOC105371049 SNHG9 SYNGR3 ZNF598 SNORA78 GFER MIR6511B1 TBL3 SLC9A3R2 NTHL1 RNF151 PKD1 TSC2 RPS2 NPW NDUFB10
dgv336n27 Chr.16:1965120 - 2038584 on Build GRCh38 Loss TBL3 SLC9A3R2 NOXO1 RNF151 SNHG9 SYNGR3 ZNF598 SNORA78 GFER NPW
nsv571189 Chr.16:2004154 - 2037561 on Build GRCh38 Loss SLC9A3R2 ZNF598 NPW

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More Information


Additional Information:

For this assay, SNP(s) [rs115604506] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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