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See other SPSB3 CNV Assays ›
Gene Symbol
SPSB3
Assay Reference Genome
Location

Chr.16:1777732 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03946125_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 90864

Gene Name:

 splA/ryanodine receptor domain and SOCS box containing 3

Gene Aliases:

 C16orf31, SSB3

Location:

 Chr.16:1776712-1782605 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPSB3 NM_001324081.1 NP_001311010.1
NM_080861.3 NP_543137.2
XM_005255673.4 XP_005255730.1
AF403028.1 AAL57347.1
AK074190.1
BC007588.1
BC024244.1 AAH24244.1
BC041897.1 AAH41897.1
BC047441.1
BI768095.1
BQ930544.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457335 Chr.16:1729694 - 1789022 on Build GRCh38 Loss MIR3177 MAPK8IP3 NME3 EME2 NUBP2 MRPS34 SPSB3
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication AMDHD2 MIR3178 MPG RPL3L BAIAP3 E4F1 WASIR2 NME3 MSLN SYNGR3 UNKL GFER FAM234A TSR3 SNORA78 DDX11L10 LOC105371047 TPSG1 NTHL1 ABCA17P ECI1 NME4 NPW CAPN15 LMF1 CCDC78 CEMP1 RNF151 RNPS1 ARHGDIG HBA1 LOC106660606 RHBDL1 MIR4516 CCNF IFT140 NARFL MIR3677 SSTR5-AS1 NTN3 DECR2 MIR6767 ABCA3 STUB1 PIGQ SOX8 NDUFB10 TMEM204 AXIN1 LOC729652 PRR35 SNORA64 RAB40C MIR662 MIR1225 LOC105371184 MIR940 EME2 ERVK13-1 RPS2 RAB11FIP3 JMJD8 HAGH HBA2 C16orf59 CACNA1H KCTD5 MIR3176 SNORA10 LOC107984876 POLR3K TSC2 MIR3180-5 NHLRC4 TMEM8A NPRL3 DNASE1L2 TELO2 LOC100134368 FAM173A RPL23AP5 CRAMP1 CHTF18 HS3ST6 LOC100287175 LOC105371046 ZNF598 ATP6V0C MCRIP2 LOC107987233 FBXL16 BRICD5 LOC105371045 LINC00254 PRSS29P HBZ MIR5587 NOXO1 LOC105371049 SNHG19 GNG13 SSTR5 MAPK8IP3 FAHD1 PRSS27 RHBDF1 FLJ42627 RAB26 HBQ1 RPUSD1 MIR3177 PGP MLST8 LOC105371038 PDIA2 C16orf91 WFIKKN1 MIR6859-4 CLCN7 PDPK1 METTL26 RGS11 MRPS34 LMF1-AS1 GNPTG C1QTNF8 TPSD1 WDR90 MIR6768 HAGHL LUC7L MIR4717 SLC9A3R2 SPSB3 TBL3 LOC101929280 MSRB1 LINC00235 PKD1 SNRNP25 TPSB2 LOC652276 UBE2I TBC1D24 METRN PRR25 WDR24 CASKIN1 PTX4 MEIOB MIR6511B1 HBM SNHG9 IGFALS CCDC154 MRPL28 TRAF7 RHOT2 HN1L SNORD60 TPSAB1 NUBP2
esv3892756 Chr.16:1764390 - 1780436 on Build GRCh38 Loss MAPK8IP3 NME3 EME2 MRPS34 SPSB3
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion MIR3177 MAPK8IP3 NME3 EME2 NUBP2 MRPS34 IGFALS SPSB3
nsv571171 Chr.16:1757779 - 1804539 on Build GRCh38 Gain+Loss MAPK8IP3 NME3 EME2 NUBP2 MRPS34 IGFALS SPSB3
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss MIR3177 LOC105371046 NME3 EME2 MRPS34 IFT140 IGFALS HAGH MAPK8IP3 HN1L CRAMP1 NUBP2 SPSB3
nsv471069 Chr.16:1754356 - 1791032 on Build GRCh38 Loss MAPK8IP3 NME3 EME2 NUBP2 MRPS34 IGFALS SPSB3
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss MIR3177 MEIOB LOC105371046 NME3 EME2 MRPS34 IFT140 IGFALS HAGH TELO2 LOC105371047 MAPK8IP3 HN1L TMEM204 FAHD1 CRAMP1 NUBP2 SPSB3
nsv827500 Chr.16:1761258 - 1795126 on Build GRCh38 Gain MAPK8IP3 NME3 EME2 NUBP2 MRPS34 IGFALS SPSB3
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss MIR3177 MEIOB NME3 EME2 MRPS34 IGFALS HAGH MAPK8IP3 HN1L FAHD1 CRAMP1 NUBP2 SPSB3
nsv571173 Chr.16:1767596 - 1780436 on Build GRCh38 Loss MAPK8IP3 NME3 EME2 MRPS34 SPSB3
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion MIR3177 MAPK8IP3 NME3 FAHD1 EME2 NUBP2 MRPS34 IGFALS SPSB3 HAGH
nsv571170 Chr.16:1752231 - 1791032 on Build GRCh38 Loss MAPK8IP3 NME3 EME2 NUBP2 MRPS34 IGFALS SPSB3

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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