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See other CBFA2T3 CNV Assays ›
Gene Symbol
CBFA2T3
Assay Reference Genome
Location

Chr.16:88888738 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03946243_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 863

Gene Name:

 CBFA2/RUNX1 translocation partner 3

Gene Aliases:

 ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4

Location:

 Chr.16:88874855-88977198 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CBFA2T3 NM_005187.5 NP_005178.4
NM_175931.2 NP_787127.1
XM_005256323.4 XP_005256380.1
XM_011523419.2 XP_011521721.1
XM_017023811.1 XP_016879300.1
AB010419.1 BAA29061.1
AB010420.1 BAA29062.1
AK308355.1
AK314766.1
BC047019.1
BC062624.1 AAH62624.1
BE676580.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss GALNS LOC105371409 CDT1 PIEZO1 LOC100129697 APRT TRAPPC2L LOC101927793 CBFA2T3 PABPN1L LOC107987238
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain GALNS ZNF778 MIR4722 PIEZO1 LOC100129697 APRT LINC00304 LOC400558 LOC101927793 LOC100289580 PABPN1L SLC22A31 LOC105371409 CDT1 TRAPPC2L ACSF3 CDH15 LOC339059 CBFA2T3 CTU2 LOC107987238
nsv1928 Chr.16:88865211 - 88897277 on Build GRCh38 Insertion LOC101927793 CBFA2T3 PABPN1L
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss GALNS LOC100129697 APRT LINC00304 LOC400558 LOC101927793 PABPN1L SLC22A31 LOC105371409 CDT1 TRAPPC2L ACSF3 CDH15 CBFA2T3 LOC107987238
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain GALNS ZNF778 PIEZO1 LOC100129697 APRT ANKRD11 LINC00304 LOC400558 LOC101927793 LOC100289580 PABPN1L SLC22A31 LOC105371409 CDT1 LOC105371414 TRAPPC2L ACSF3 LOC100287036 CDH15 LOC339059 CBFA2T3 LOC107987238
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain GALNS CDT1 PIEZO1 APRT TRAPPC2L LOC101927793 CBFA2T3 PABPN1L LOC107987238
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion GALNS LOC105371409 CDT1 LOC100129697 APRT TRAPPC2L LOC101927793 CBFA2T3 PABPN1L LOC107987238
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss GALNS LOC100129697 APRT LINC00304 LOC400558 LOC101927793 PABPN1L LOC105371409 CDT1 TRAPPC2L ACSF3 CDH15 CBFA2T3 LOC107987238
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SPG7 SNAI3 TUBB3 APRT TCF25 LOC101927817 URAHP LOC107984817 MC1R CDT1 ACSF3 CBFA2T3 CPNE7 CTU2 FAM157C PIEZO1 VPS9D1-AS1 DPEP1 LOC101927793 AFG3L1P PABPN1L GAS8 SPATA2L ZNF276 RPL13 TRAPPC2L GALNS MIR4722 ANKRD11 LOC400558 CENPBD1 SLC22A31 PRDM7 TUBB8P7 SNORD68 FANCA CYBA LOC100287036 CHMP1A CDK10 LOC107987238 ZNF778 RNF166 SPATA33 GAS8-AS1 DEF8 LOC100129697 DBNDD1 LINC00304 LOC100289580 SPIRE2 LOC105371409 MVD VPS9D1 LOC105371414 IL17C SNAI3-AS1 CDH15 LOC339059 LOC105371419
esv3348326 Chr.16:88888444 - 88888837 on Build GRCh38 Duplication CBFA2T3
nsv1061256 Chr.16:88711587 - 89013365 on Build GRCh38 Gain GALNS MIR4722 PIEZO1 LOC100129697 APRT LOC101927793 LOC100289580 PABPN1L LOC105371409 CDT1 TRAPPC2L LOC339059 CBFA2T3 CTU2 LOC107987238

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More Information


Additional Information:

For this assay, SNP(s) [rs74035883] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Function(s) Process(es)


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