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See other CBFA2T3 CNV Assays ›
Gene Symbol
CBFA2T3
Assay Reference Genome
Location

Chr.16:88888738 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03946243_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 863

Gene Name:

 CBFA2/RUNX1 translocation partner 3

Gene Aliases:

 ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4

Location:

 Chr.16:88874855-88977198 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CBFA2T3 NM_005187.5 NP_005178.4
NM_175931.2 NP_787127.1
XM_005256323.4 XP_005256380.1
XM_011523419.2 XP_011521721.1
XM_017023811.1 XP_016879300.1
AB010419.1 BAA29061.1
AB010420.1 BAA29062.1
AK308355.1
AK314766.1
BC047019.1
BC062624.1 AAH62624.1
BE676580.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss LOC101927793 PIEZO1 LOC100129697 PABPN1L TRAPPC2L LOC105371409 CBFA2T3 LOC107987238 APRT CDT1 GALNS
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain PIEZO1 PABPN1L LINC00304 SLC22A31 LOC100289580 APRT CTU2 CDT1 LOC101927793 ZNF778 LOC100129697 ACSF3 CDH15 TRAPPC2L LOC105371409 CBFA2T3 LOC339059 LOC107987238 LOC400558 MIR4722 GALNS
nsv1928 Chr.16:88865211 - 88897277 on Build GRCh38 Insertion LOC101927793 PABPN1L CBFA2T3
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss PABPN1L LINC00304 SLC22A31 APRT CDT1 LOC101927793 LOC100129697 ACSF3 CDH15 TRAPPC2L LOC105371409 CBFA2T3 LOC107987238 LOC400558 GALNS
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain PIEZO1 PABPN1L LINC00304 SLC22A31 LOC100289580 APRT ANKRD11 CDT1 LOC101927793 ZNF778 LOC100287036 LOC100129697 ACSF3 CDH15 TRAPPC2L LOC105371409 CBFA2T3 LOC339059 LOC107987238 LOC105371414 LOC400558 GALNS
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain LOC101927793 PIEZO1 PABPN1L TRAPPC2L CBFA2T3 LOC107987238 APRT CDT1 GALNS
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss PABPN1L LINC00304 APRT CDT1 LOC101927793 LOC100129697 ACSF3 CDH15 TRAPPC2L LOC105371409 CBFA2T3 LOC107987238 LOC400558 GALNS
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion LOC101927793 LOC100129697 PABPN1L TRAPPC2L LOC105371409 CBFA2T3 LOC107987238 APRT CDT1 GALNS
esv3348326 Chr.16:88888444 - 88888837 on Build GRCh38 Duplication CBFA2T3
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss PIEZO1 DPEP1 SPIRE2 SNAI3-AS1 SPATA2L DBNDD1 ANKRD11 LOC100129697 CDH15 CBFA2T3 TCF25 LOC105371414 TUBB8P7 VPS9D1-AS1 IL17C SLC22A31 LOC100289580 APRT MVD CTU2 MC1R LOC101927793 LOC107984817 TRAPPC2L SNORD68 FAM157C MIR4722 CDK10 CYBA PABPN1L LINC00304 SPG7 FANCA GAS8 LOC101927817 SNAI3 CDT1 TUBB3 ACSF3 LOC105371409 AFG3L1P LOC339059 LOC107987238 GAS8-AS1 LOC400558 LOC105371419 GALNS RPL13 ZNF276 VPS9D1 SPATA33 CENPBD1 URAHP ZNF778 LOC100287036 RNF166 CPNE7 DEF8 CHMP1A PRDM7
dgv3065n100 Chr.16:88711587 - 88927172 on Build GRCh38 Gain PIEZO1 PABPN1L LOC100289580 APRT CTU2 CDT1 LOC101927793 TRAPPC2L CBFA2T3 LOC339059 LOC107987238 MIR4722 GALNS

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More Information


Additional Information:

For this assay, SNP(s) [rs74035883] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Function(s) Process(es)


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