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See other CBFA2T3 CNV Assays ›
Gene Symbol
CBFA2T3
Assay Reference Genome
Location

Chr.16:88889212 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03948281_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 863

Gene Name:

 CBFA2/RUNX1 translocation partner 3

Gene Aliases:

 ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4

Location:

 Chr.16:88874855-88977198 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CBFA2T3 NM_005187.5 NP_005178.4
NM_175931.2 NP_787127.1
XM_005256323.4 XP_005256380.1
XM_011523419.2 XP_011521721.1
XM_017023811.1 XP_016879300.1
AB010419.1 BAA29061.1
AB010420.1 BAA29062.1
AK308355.1
AK314766.1
BC047019.1
BC062624.1 AAH62624.1
BE676580.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss GALNS APRT LOC105371409 LOC100129697 TRAPPC2L LOC107987238 PABPN1L CDT1 PIEZO1 LOC101927793 CBFA2T3
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain LINC00304 GALNS CDH15 ACSF3 APRT LOC100129697 ZNF778 PABPN1L CDT1 LOC100289580 LOC339059 LOC400558 LOC105371409 SLC22A31 TRAPPC2L LOC107987238 PIEZO1 CTU2 LOC101927793 MIR4722 CBFA2T3
nsv1928 Chr.16:88865211 - 88897277 on Build GRCh38 Insertion PABPN1L LOC101927793 CBFA2T3
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss LINC00304 GALNS CDH15 ACSF3 APRT LOC100129697 PABPN1L CDT1 LOC400558 LOC105371409 SLC22A31 TRAPPC2L LOC107987238 LOC101927793 CBFA2T3
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain ANKRD11 LINC00304 GALNS CDH15 ACSF3 APRT LOC100129697 LOC100287036 ZNF778 PABPN1L CDT1 LOC105371414 LOC100289580 LOC339059 LOC400558 LOC105371409 SLC22A31 TRAPPC2L LOC107987238 PIEZO1 LOC101927793 CBFA2T3
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain GALNS APRT TRAPPC2L LOC107987238 PABPN1L CDT1 PIEZO1 LOC101927793 CBFA2T3
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss LINC00304 GALNS CDH15 ACSF3 APRT LOC100129697 PABPN1L CDT1 LOC400558 LOC105371409 TRAPPC2L LOC107987238 LOC101927793 CBFA2T3
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion GALNS APRT LOC105371409 LOC100129697 TRAPPC2L LOC107987238 PABPN1L CDT1 LOC101927793 CBFA2T3
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss GALNS RNF166 ACSF3 SNAI3 GAS8 CDT1 SPG7 SLC22A31 DBNDD1 PIEZO1 LOC101927817 LOC101927793 URAHP CHMP1A IL17C LINC00304 LOC105371419 PABPN1L LOC105371414 CENPBD1 LOC400558 RPL13 SPATA2L CTU2 MVD FAM157C ANKRD11 TCF25 CDH15 ZNF778 AFG3L1P LOC100289580 DPEP1 LOC339059 ZNF276 TRAPPC2L GAS8-AS1 LOC107987238 CPNE7 CBFA2T3 DEF8 TUBB8P7 CYBA APRT LOC100129697 FANCA LOC100287036 SPIRE2 TUBB3 VPS9D1-AS1 SNORD68 VPS9D1 CDK10 SPATA33 LOC105371409 SNAI3-AS1 MC1R PRDM7 LOC107984817 MIR4722
dgv3065n100 Chr.16:88711587 - 88927172 on Build GRCh38 Gain GALNS APRT PABPN1L CDT1 LOC100289580 LOC339059 TRAPPC2L LOC107987238 PIEZO1 CTU2 LOC101927793 MIR4722 CBFA2T3

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More Information


Additional Information:

For this assay, SNP(s) [rs116046814,rs76967273] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Function(s) Process(es)


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