Hs03948305_cn

• Gene Symbol: PABPN1L
• Assay Reference Genome Location: Chr.16:88866947 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 390748
• Gene Name: poly(A) binding protein nuclear 1 like (cytoplasmic)
• Gene Aliases: PABPNL1, ePABP2
• Location: Chr.16:88862623-88870152 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PABPN1L	XM_017023230.1			XP_016878719.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	CBFA2T3 LOC107987238 LOC101927793 PABPN1L LOC100129697 APRT TRAPPC2L CDT1 PIEZO1 GALNS LOC105371409
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CBFA2T3 ZNF778 PABPN1L APRT SLC22A31 ACSF3 TRAPPC2L CDH15 CDT1 PIEZO1 CTU2 LINC00304 LOC100289580 LOC107987238 LOC101927793 LOC339059 LOC100129697 MIR4722 LOC400558 GALNS LOC105371409
nsv1928	Chr.16:88865211 - 88897277 on Build GRCh38	Insertion	CBFA2T3 LOC101927793 PABPN1L
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CBFA2T3 PABPN1L APRT SLC22A31 ACSF3 TRAPPC2L CDH15 CDT1 LINC00304 LOC107987238 LOC101927793 LOC100129697 LOC400558 GALNS LOC105371409
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	CBFA2T3 ZNF778 ANKRD11 PABPN1L APRT SLC22A31 ACSF3 TRAPPC2L CDH15 CDT1 PIEZO1 LINC00304 LOC100289580 LOC107987238 LOC101927793 LOC339059 LOC100129697 LOC105371414 LOC400558 LOC100287036 GALNS LOC105371409
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	CBFA2T3 LOC107987238 LOC101927793 PABPN1L APRT TRAPPC2L CDT1 PIEZO1 GALNS
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	CBFA2T3 LOC107987238 LOC101927793 PABPN1L LOC100129697 APRT TRAPPC2L CDT1 GALNS LOC105371409
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CBFA2T3 PABPN1L APRT ACSF3 TRAPPC2L CDH15 CDT1 LINC00304 LOC107987238 LOC101927793 LOC100129697 LOC400558 GALNS LOC105371409
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	ANKRD11 SNORD68 CPNE7 APRT PRDM7 LOC105371419 FANCA PIEZO1 GAS8-AS1 RNF166 LOC100287036 FAM157C IL17C ZNF778 SLC22A31 SNAI3-AS1 TRAPPC2L AFG3L1P CDH15 SPATA33 CTU2 DPEP1 MC1R CDK10 TUBB3 LINC00304 SPIRE2 LOC339059 LOC100129697 LOC105371414 TUBB8P7 SNAI3 VPS9D1-AS1 URAHP GALNS DEF8 MVD SPG7 ACSF3 CYBA LOC101927817 LOC107987238 CHMP1A SPATA2L LOC101927793 RPL13 VPS9D1 DBNDD1 GAS8 MIR4722 LOC107984817 CBFA2T3 PABPN1L CENPBD1 CDT1 LOC100289580 ZNF276 TCF25 LOC400558 LOC105371409
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	CBFA2T3 PABPN1L TRAPPC2L GALNS
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	CBFA2T3 PABPN1L APRT TRAPPC2L CDT1 PIEZO1 CTU2 LOC100289580 LOC107987238 LOC101927793 LOC339059 LOC100129697 MIR4722 GALNS LOC105371409

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

translation initiation factor

Gene Ontology Categories:

Function(s)

nucleotide binding
RNA binding