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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2539556 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03949362_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
AK293900.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
BI830733.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBZ POLR3K WDR90 NME3 LOC105371045 HAGH HBA2 C16orf91 MCRIP2 METTL26 FLJ42627 FBXL16 WDR24 PDPK1 DNASE1L2 FAHD1 SLC9A3R2 WFIKKN1 CLCN7 FAM234A ATP6V0C CRAMP1 RNF151 WASIR2 SNORA10 TPSG1 NTHL1 MIR662 LOC105371049 LOC100287175 RAB40C LOC652276 TBL3 PRSS27 MIR3180-5 LMF1-AS1 LOC106660606 SNORD60 HS3ST6 MIR3177 CASKIN1 AXIN1 NARFL ABCA17P ARHGDIG MIR3677 RGS11 BAIAP3 LINC00235 MIR5587 NTN3 IFT140 MIR4717 MIR6768 PGP CACNA1H ABCA3 TSC2 AMDHD2 MSLN NUBP2 SNORA64 ERVK13-1 MIR4516 LOC105371184 NPW MLST8 RAB26 CCDC78 LMF1 NDUFB10 MAPK8IP3 SNORA78 MIR6767 UBE2I TPSD1 FAM173A HBQ1 SSTR5-AS1 TRAF7 MRPL28 MPG LOC729652 C16orf59 ZNF598 PIGQ METRN GNPTG HAGHL E4F1 RAB11FIP3 TELO2 CHTF18 PRR35 SNHG9 CEMP1 SOX8 LOC107984876 GNG13 RPL23AP5 MEIOB GFER RPL3L EME2 LOC100134368 RHBDL1 PKD1 JMJD8 TMEM204 NPRL3 HBM SSTR5 SNRNP25 RPS2 RNPS1 SPSB3 NOXO1 MIR1225 PRSS29P MIR6511B1 TPSB2 UNKL LOC101929280 LUC7L CAPN15 STUB1 NME4 NHLRC4 IGFALS RPUSD1 TPSAB1 RHOT2 SNHG19 MIR6859-4 CCDC154 MRPS34 LOC107987233 SYNGR3 TMEM8A RHBDF1 MIR940 LOC105371038 LINC00254 LOC105371047 ECI1 TSR3 KCTD5 CCNF HBA1 MSRB1 PRR25 MIR3176 PDIA2 HN1L DECR2 TBC1D24 MIR3178 PTX4 BRICD5 DDX11L10 C1QTNF8 LOC105371046
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss SRRM2-AS1 SRRM2 ATP6V0C PRSS33 AMDHD2 PRSS21 ERVK13-1 KCTD5 LOC652276 FLJ42627 TBC1D24 MIR3178 PRSS41 PDPK1 PRSS27 TCEB2 CEMP1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss LOC652276 ATP6V0C AMDHD2 FLJ42627 TBC1D24 MIR3178 PDPK1 ERVK13-1 CEMP1
esv22359 Chr.16:2538456 - 2585013 on Build GRCh38 Gain PDPK1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6511B1 CASKIN1 ABCA17P TRAF7 MIR3677 LOC729652 C16orf59 NTN3 E4F1 MIR4717 PDPK1 DNASE1L2 MIR6768 PGP CEMP1 ABCA3 TSC2 SNHG19 ATP6V0C AMDHD2 MIR940 ECI1 MIR4516 LOC105371049 CCNF LOC652276 PKD1 MLST8 RAB26 TBC1D24 MIR3178 RNPS1 MIR3180-5 MIR6767 LOC106660606 SNORD60 BRICD5 MIR1225

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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