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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2539556 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03949362_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
AK293900.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
BI830733.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication FLJ42627 NHLRC4 MIR940 NUBP2 E4F1 ECI1 MPG STUB1 IGFALS TBL3 RAB40C TPSD1 MIR6767 SSTR5-AS1 RNPS1 AXIN1 RAB26 LOC105371038 RHOT2 SNORA78 MIR662 NARFL TRAF7 UBE2I PRR25 PRSS27 MSRB1 MIR1225 HN1L ERVK13-1 TBC1D24 SPSB3 UNKL DNASE1L2 HS3ST6 BRICD5 RHBDF1 GFER CCDC154 METRN PDIA2 DDX11L10 RPUSD1 ABCA3 PRR35 NTN3 C1QTNF8 NTHL1 C16orf59 SNORD60 HBZ NPW CLCN7 MRPS34 PDPK1 MIR6511B1 MLST8 LMF1-AS1 WASIR2 LOC105371046 MSLN JMJD8 POLR3K CAPN15 LINC00235 PTX4 MAPK8IP3 CASKIN1 KCTD5 LOC107984876 LUC7L MIR6859-4 SOX8 SNHG9 MEIOB AMDHD2 NME3 LOC106660606 LOC107987233 MIR4516 TMEM204 ATP6V0C PIGQ HBQ1 CHTF18 RPL23AP5 GNPTG MCRIP2 SSTR5 TPSAB1 METTL26 HBM LOC729652 HBA2 LMF1 MIR3176 LOC105371047 PGP SNORA64 MIR5587 CACNA1H WDR90 LOC100287175 MIR3178 MRPL28 SNHG19 TSC2 SNRNP25 LOC100134368 FAHD1 NDUFB10 FAM173A RPL3L LOC105371045 RGS11 MIR3180-5 NME4 CEMP1 BAIAP3 EME2 ZNF598 CCNF MIR3177 NPRL3 TSR3 RHBDL1 PKD1 ABCA17P SLC9A3R2 PRSS29P HAGH RPS2 CRAMP1 HBA1 SYNGR3 C16orf91 IFT140 LOC105371184 WDR24 LINC00254 TPSB2 GNG13 LOC105371049 DECR2 NOXO1 ARHGDIG TPSG1 FBXL16 LOC652276 MIR6768 CCDC78 MIR3677 RNF151 FAM234A WFIKKN1 MIR4717 TELO2 HAGHL LOC101929280 SNORA10 TMEM8A RAB11FIP3
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss FLJ42627 TCEB2 MIR3178 SRRM2-AS1 LOC652276 PRSS33 PRSS21 PRSS27 KCTD5 PRSS41 ERVK13-1 CEMP1 AMDHD2 TBC1D24 SRRM2 PDPK1 ATP6V0C
esv22359 Chr.16:2538456 - 2585013 on Build GRCh38 Gain PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss FLJ42627 ERVK13-1 MIR3178 CEMP1 AMDHD2 LOC652276 TBC1D24 PDPK1 ATP6V0C
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ABCA3 MIR940 NTN3 LOC729652 E4F1 ECI1 C16orf59 SNORD60 MIR6767 RNPS1 LOC105371049 PGP PDPK1 MIR6511B1 RAB26 MLST8 MIR3178 LOC652276 TRAF7 MIR6768 SNHG19 TSC2 MIR3677 CASKIN1 MIR1225 MIR4717 MIR3180-5 CEMP1 AMDHD2 TBC1D24 CCNF LOC106660606 DNASE1L2 MIR4516 BRICD5 PKD1 ATP6V0C ABCA17P

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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