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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89747847 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03949544_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 35
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss TCF25 SPIRE2 FANCA LOC105371419 LOC107984817 ZNF276
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion CDK10 VPS9D1-AS1 FANCA VPS9D1 ZNF276 SPATA2L
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss VPS9D1-AS1 DEF8 DBNDD1 LOC105371419 DPEP1 TUBB3 CENPBD1 LOC107984817 GAS8 SPATA2L CDK10 TCF25 SPIRE2 FANCA MC1R GAS8-AS1 VPS9D1 AFG3L1P CHMP1A ZNF276 SPATA33
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain CDK10 VPS9D1-AS1 SPIRE2 FANCA LOC105371419 VPS9D1 LOC107984817 ZNF276 SPATA33 SPATA2L
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SNORD68 URAHP DBNDD1 DPEP1 RPL13 TUBB3 CPNE7 CENPBD1 TUBB8P7 GAS8 SPATA2L ANKRD11 FAM157C TCF25 FANCA MC1R PRDM7 AFG3L1P ZNF276 SPATA33 LOC101927817 VPS9D1-AS1 DEF8 LOC105371419 LOC107984817 CDK10 LOC105371414 SPIRE2 ZNF778 GAS8-AS1 VPS9D1 CHMP1A LOC100287036 SPG7
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss SPIRE2 FANCA LOC105371419 LOC107984817 ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SNORD68 DPEP1 RPL13 MIR4722 TRAPPC2L ANKRD11 FAM157C TCF25 FANCA CDT1 PRDM7 RNF166 SPATA33 ACSF3 GALNS VPS9D1-AS1 LOC101927793 LINC00304 SLC22A31 LOC107984817 CTU2 CDK10 SPIRE2 SNAI3-AS1 PIEZO1 LOC100287036 SPG7 IL17C URAHP DBNDD1 LOC105371409 SNAI3 TUBB3 CPNE7 CENPBD1 TUBB8P7 LOC100129697 CBFA2T3 GAS8 MVD LOC339059 SPATA2L PABPN1L LOC107987238 LOC100289580 MC1R AFG3L1P CYBA ZNF276 LOC101927817 DEF8 LOC105371419 LOC400558 LOC105371414 ZNF778 GAS8-AS1 VPS9D1 APRT CDH15 CHMP1A
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SNORD68 VPS9D1-AS1 DPEP1 RPL13 CPNE7 SPATA2L CDK10 FANCA VPS9D1 CHMP1A ZNF276 SPATA33 SPG7

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