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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89747847 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03949544_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 35
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC107984817 SPIRE2 FANCA TCF25 ZNF276 LOC105371419
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion CDK10 VPS9D1-AS1 VPS9D1 FANCA SPATA2L ZNF276
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain LOC107984817 SPATA33 CDK10 VPS9D1-AS1 SPIRE2 VPS9D1 FANCA SPATA2L ZNF276 LOC105371419
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA33 CENPBD1 CDK10 VPS9D1-AS1 TUBB3 VPS9D1 FANCA SPATA2L LOC105371419 LOC107984817 MC1R GAS8-AS1 DPEP1 DBNDD1 SPIRE2 AFG3L1P TCF25 CHMP1A ZNF276 DEF8 GAS8
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss CENPBD1 CDK10 VPS9D1 RPL13 FANCA LOC105371419 ANKRD11 MC1R GAS8-AS1 DBNDD1 ZNF778 SPIRE2 TCF25 ZNF276 GAS8 LOC100287036 PRDM7 SPATA33 VPS9D1-AS1 CPNE7 TUBB3 SPATA2L URAHP SPG7 SNORD68 LOC107984817 DPEP1 AFG3L1P CHMP1A DEF8 FAM157C LOC101927817 TUBB8P7 LOC105371414
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC107984817 SPIRE2 FANCA ZNF276 LOC105371419
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss IL17C RNF166 VPS9D1 RPL13 FANCA LOC339059 LOC100129697 ANKRD11 TRAPPC2L GAS8-AS1 DBNDD1 ZNF778 SPIRE2 CTU2 TCF25 ZNF276 GAS8 CBFA2T3 SLC22A31 PRDM7 TUBB3 SPATA2L URAHP LOC107984817 LOC107987238 LOC101927793 DPEP1 ACSF3 PABPN1L GALNS SNAI3 AFG3L1P LOC101927817 TUBB8P7 CDT1 MVD LINC00304 CENPBD1 LOC400558 CDK10 MIR4722 SNAI3-AS1 CYBA LOC105371419 LOC100289580 MC1R PIEZO1 LOC100287036 SPATA33 VPS9D1-AS1 CPNE7 CDH15 SPG7 SNORD68 LOC105371409 APRT CHMP1A DEF8 FAM157C LOC105371414
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA33 CDK10 VPS9D1-AS1 CPNE7 VPS9D1 RPL13 FANCA SPATA2L SPG7 SNORD68 DPEP1 CHMP1A ZNF276

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