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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89746058 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03953277_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 37
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion VPS9D1 FANCA VPS9D1-AS1 ZNF276
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss TCF25 FANCA ZNF276 SPIRE2 LOC107984817 LOC105371419
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion VPS9D1 SPATA2L FANCA VPS9D1-AS1 ZNF276 CDK10
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain VPS9D1 SPATA2L FANCA VPS9D1-AS1 ZNF276 SPIRE2 LOC107984817 LOC105371419 SPATA33 CDK10
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L TCF25 FANCA CENPBD1 CHMP1A SPIRE2 GAS8-AS1 LOC107984817 LOC105371419 SPATA33 VPS9D1 MC1R DBNDD1 AFG3L1P VPS9D1-AS1 ZNF276 TUBB3 GAS8 DPEP1 DEF8 CDK10
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SPATA2L FANCA RPL13 SPIRE2 LOC101927817 SPATA33 MC1R DBNDD1 ZNF276 SPG7 DEF8 ANKRD11 TCF25 TUBB8P7 CENPBD1 CHMP1A PRDM7 SNORD68 FAM157C LOC100287036 GAS8-AS1 LOC107984817 CPNE7 LOC105371419 URAHP VPS9D1 AFG3L1P VPS9D1-AS1 ZNF778 TUBB3 GAS8 DPEP1 LOC105371414 CDK10
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA ZNF276 SPIRE2 LOC107984817 LOC105371419
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC100289580 LOC100129697 LINC00304 ACSF3 RNF166 LOC101927817 SNAI3-AS1 SPATA33 DBNDD1 SPG7 TCF25 TUBB8P7 FAM157C LOC100287036 GAS8-AS1 LOC107984817 VPS9D1 AFG3L1P VPS9D1-AS1 TUBB3 LOC105371409 SLC22A31 APRT CDT1 CYBA CTU2 PIEZO1 CDK10 GALNS SPATA2L FANCA LOC339059 RPL13 SPIRE2 MC1R ZNF276 TRAPPC2L CDH15 DEF8 CBFA2T3 ANKRD11 LOC400558 LOC107987238 CENPBD1 CHMP1A PRDM7 MVD SNORD68 LOC101927793 SNAI3 CPNE7 PABPN1L LOC105371419 URAHP ZNF778 MIR4722 GAS8 DPEP1 IL17C LOC105371414
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA2L FANCA CHMP1A RPL13 SNORD68 CPNE7 SPATA33 VPS9D1 VPS9D1-AS1 ZNF276 SPG7 DPEP1 CDK10

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