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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89746058 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03953277_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 37
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA VPS9D1 VPS9D1-AS1 ZNF276
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss FANCA SPIRE2 ZNF276 LOC105371419 TCF25 LOC107984817
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion FANCA VPS9D1 CDK10 VPS9D1-AS1 ZNF276 SPATA2L
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss FANCA DEF8 SPIRE2 GAS8 DPEP1 GAS8-AS1 CDK10 VPS9D1-AS1 CENPBD1 MC1R TCF25 SPATA2L TUBB3 VPS9D1 DBNDD1 AFG3L1P CHMP1A ZNF276 SPATA33 LOC105371419 LOC107984817
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain FANCA VPS9D1 SPIRE2 CDK10 VPS9D1-AS1 ZNF276 SPATA33 LOC105371419 SPATA2L LOC107984817
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss FANCA DEF8 SPIRE2 GAS8 DPEP1 LOC100287036 CDK10 PRDM7 MC1R TUBB3 VPS9D1 ANKRD11 RPL13 CHMP1A LOC105371414 LOC101927817 SPATA33 FAM157C LOC105371419 GAS8-AS1 VPS9D1-AS1 CENPBD1 URAHP ZNF778 CPNE7 TCF25 SPATA2L TUBB8P7 DBNDD1 AFG3L1P SPG7 ZNF276 SNORD68 LOC107984817
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA SPIRE2 ZNF276 LOC105371419 LOC107984817
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss CBFA2T3 FANCA SPIRE2 DPEP1 LOC100287036 CDK10 PIEZO1 MC1R APRT ANKRD11 GALNS SPATA33 FAM157C LOC105371419 GAS8-AS1 SNAI3-AS1 CENPBD1 CTU2 DBNDD1 LOC339059 MIR4722 LOC107987238 AFG3L1P SNAI3 LOC101927793 ACSF3 SPG7 ZNF276 TRAPPC2L LOC107984817 DEF8 GAS8 LOC105371409 LINC00304 PRDM7 TUBB3 VPS9D1 CDH15 RPL13 CDT1 CHMP1A IL17C CYBA LOC105371414 LOC101927817 SLC22A31 MVD VPS9D1-AS1 LOC100129697 URAHP ZNF778 CPNE7 PABPN1L LOC400558 TCF25 SPATA2L TUBB8P7 RNF166 LOC100289580 SNORD68
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion FANCA DPEP1 CDK10 VPS9D1-AS1 CPNE7 SPATA2L VPS9D1 RPL13 CHMP1A SPG7 ZNF276 SPATA33 SNORD68

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