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Gene Symbol
RAB11FIP3
Assay Reference Genome
Location

Chr.16:440715 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03953846_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9727

Gene Name:

 RAB11 family interacting protein 3

Gene Aliases:

 CART1, Rab11-FIP3

Location:

 Chr.16:425621-522485 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB11FIP3 NM_014700.3 NP_055515.1
XM_005255713.3 XP_005255770.1
XM_005255717.3 XP_005255774.1
XM_005255718.3 XP_005255775.1
XM_017023907.1 XP_016879396.1
AB014565.1
AF395731.1 AAL12940.1
BC051360.1 AAH51360.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SOX8 BRICD5 HBZ BAIAP3 MIR940 PDIA2 LMF1 MIR3178 HBM LUC7L MIR6859-4 LOC105371038 GFER SNORD60 UNKL LOC105371046 TBL3 UBE2I LOC105371049 MRPS34 MIR1225 MIR3176 PRSS29P DECR2 LOC105371184 FAHD1 TSC2 CLCN7 POLR3K E4F1 HBA2 SNRNP25 RNF151 NOXO1 MRPL28 LOC100134368 MLST8 MIR4516 RNPS1 NPRL3 METRN LOC105371045 CACNA1H SPSB3 DNASE1L2 MIR6511B1 RGS11 AXIN1 WASIR2 AMDHD2 RPUSD1 LOC100287175 NME4 TPSB2 FLJ42627 PKD1 RAB26 SNORA64 FAM234A KCTD5 NTN3 RHBDF1 MIR6768 ABCA3 ABCA17P SYNGR3 PRSS27 C16orf59 EME2 SSTR5 CCDC154 LMF1-AS1 DDX11L10 TBC1D24 ATP6V0C CHTF18 SNHG19 NARFL RPL23AP5 C16orf91 METTL26 LOC729652 CCNF MIR3177 HN1L MIR3677 LOC101929280 LOC107984876 LOC105371047 LOC107987233 RAB40C TRAF7 MAPK8IP3 FBXL16 JMJD8 CASKIN1 NUBP2 FAM173A C1QTNF8 SNHG9 LOC106660606 WFIKKN1 ARHGDIG PGP STUB1 CRAMP1 LOC652276 SLC9A3R2 CCDC78 TPSAB1 GNPTG TSR3 CEMP1 MSLN MSRB1 TELO2 MIR5587 MIR6767 NDUFB10 NPW HAGHL PTX4 LINC00254 RAB11FIP3 MIR662 WDR24 RHBDL1 PRR35 SNORA10 RHOT2 HS3ST6 MIR3180-5 GNG13 SSTR5-AS1 MPG SNORA78 CAPN15 PRR25 ZNF598 HAGH MCRIP2 NME3 TMEM204 PDPK1 ECI1 MEIOB MIR4717 NTHL1 PIGQ TPSG1 NHLRC4 IGFALS HBA1 WDR90 ERVK13-1 IFT140 RPL3L LINC00235 TPSD1 TMEM8A HBQ1 RPS2
nsv521610 Chr.16:430096 - 445538 on Build GRCh38 Gain RAB11FIP3
dgv4810n54 Chr.16:380011 - 445662 on Build GRCh38 Loss RAB11FIP3 LOC100134368 DECR2 TMEM8A RPL23AP5 NME4
esv3637563 Chr.16:263248 - 505590 on Build GRCh38 Gain ARHGDIG RGS11 RAB11FIP3 FAM234A MRPL28 PDIA2 LOC100134368 DECR2 TMEM8A AXIN1 RPL23AP5 NME4
esv3637576 Chr.16:439034 - 480097 on Build GRCh38 Gain RAB11FIP3
nsv570954 Chr.16:342461 - 530124 on Build GRCh38 Loss CAPN15 RAB11FIP3 LINC00235 MRPL28 LOC100134368 DECR2 TMEM8A AXIN1 RPL23AP5 NME4
dgv4809n54 Chr.16:322597 - 451362 on Build GRCh38 Loss RAB11FIP3 MRPL28 LOC100134368 DECR2 TMEM8A AXIN1 RPL23AP5 NME4
nsv457303 Chr.16:383623 - 445662 on Build GRCh38 Loss RAB11FIP3 LOC100134368 DECR2 RPL23AP5 NME4
dgv32n68 Chr.16:245507 - 476226 on Build GRCh38 Loss ARHGDIG RGS11 RAB11FIP3 FAM234A MRPL28 PDIA2 LOC100134368 DECR2 TMEM8A AXIN1 RPL23AP5 NME4

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More Information


Additional Information:

For this assay, SNP(s) [rs116768422] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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