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See other RAB11FIP3 CNV Assays ›
Gene Symbol
RAB11FIP3
Assay Reference Genome
Location

Chr.16:440715 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03953846_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9727

Gene Name:

 RAB11 family interacting protein 3

Gene Aliases:

 CART1, Rab11-FIP3

Location:

 Chr.16:425621-522485 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB11FIP3 NM_014700.3 NP_055515.1
XM_005255713.3 XP_005255770.1
XM_005255717.3 XP_005255774.1
XM_005255718.3 XP_005255775.1
XM_017023907.1 XP_016879396.1
AB014565.1
AF395731.1 AAL12940.1
BC051360.1 AAH51360.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv521610 Chr.16:430096 - 445538 on Build GRCh38 Gain RAB11FIP3
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR6768 BAIAP3 IFT140 LUC7L AXIN1 POLR3K JMJD8 MIR4516 MIR3180-5 MSLN SLC9A3R2 LOC105371045 LOC107987233 NTN3 ATP6V0C SNRNP25 TPSB2 TBL3 TSR3 NHLRC4 EME2 PRSS27 TBC1D24 RHBDL1 PKD1 LOC105371047 KCTD5 LINC00254 CCDC78 LOC105371049 HBQ1 C1QTNF8 PGP CASKIN1 SNORD60 SPSB3 HAGH RHOT2 MIR662 FLJ42627 MIR3177 DDX11L10 RPUSD1 PRSS29P MIR3178 LOC100134368 SSTR5-AS1 MIR5587 LOC652276 ABCA3 NDUFB10 MIR6767 MIR6511B1 MAPK8IP3 METTL26 NUBP2 SNORA64 ARHGDIG ERVK13-1 GFER SNORA10 LOC107984876 LOC101929280 RPS2 RAB11FIP3 CCDC154 HBA1 TMEM8A MRPL28 PDPK1 AMDHD2 HBZ METRN TSC2 RHBDF1 HBM MIR6859-4 PRR25 E4F1 CHTF18 TPSD1 TELO2 ABCA17P WASIR2 FAHD1 PTX4 TPSAB1 RAB40C PIGQ CRAMP1 RNPS1 RGS11 MIR3677 CACNA1H NOXO1 SYNGR3 LOC105371038 TRAF7 ZNF598 NPW MIR4717 MEIOB MSRB1 STUB1 UBE2I ECI1 GNPTG LMF1 TMEM204 CAPN15 LMF1-AS1 NPRL3 HBA2 TPSG1 NME3 RPL23AP5 FAM173A WDR90 GNG13 C16orf91 SNHG9 BRICD5 HAGHL LOC105371184 DECR2 LOC100287175 FAM234A RAB26 IGFALS FBXL16 HS3ST6 NME4 SOX8 HN1L MIR3176 LINC00235 DNASE1L2 LOC729652 SNORA78 MPG LOC105371046 RPL3L UNKL C16orf59 CCNF MIR1225 SNHG19 NARFL WDR24 CLCN7 PDIA2 MLST8 SSTR5 MCRIP2 WFIKKN1 PRR35 MRPS34 LOC106660606 CEMP1 RNF151 NTHL1 MIR940
dgv4810n54 Chr.16:380011 - 445662 on Build GRCh38 Loss RPL23AP5 LOC100134368 NME4 RAB11FIP3 DECR2 TMEM8A
esv3637576 Chr.16:439034 - 480097 on Build GRCh38 Gain RAB11FIP3
esv3637563 Chr.16:263248 - 505590 on Build GRCh38 Gain RPL23AP5 LOC100134368 MRPL28 NME4 RAB11FIP3 ARHGDIG AXIN1 PDIA2 DECR2 FAM234A TMEM8A RGS11
nsv570954 Chr.16:342461 - 530124 on Build GRCh38 Loss RPL23AP5 CAPN15 LOC100134368 MRPL28 NME4 RAB11FIP3 LINC00235 AXIN1 DECR2 TMEM8A
nsv457303 Chr.16:383623 - 445662 on Build GRCh38 Loss RPL23AP5 LOC100134368 NME4 RAB11FIP3 DECR2
dgv4809n54 Chr.16:322597 - 451362 on Build GRCh38 Loss RPL23AP5 LOC100134368 MRPL28 NME4 RAB11FIP3 AXIN1 DECR2 TMEM8A
dgv32n68 Chr.16:245507 - 476226 on Build GRCh38 Loss RPL23AP5 LOC100134368 MRPL28 NME4 RAB11FIP3 ARHGDIG AXIN1 PDIA2 DECR2 FAM234A TMEM8A RGS11

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More Information


Additional Information:

For this assay, SNP(s) [rs116768422] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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