Hs03965002_cn

• Gene Symbol: GDPD1
• Assay Reference Genome Location: Chr.17:59228483 on build GRCh38
• Cytoband: 17q22

Target Gene Details

• Entrez Gene ID: 284161
• Gene Name: glycerophosphodiester phosphodiesterase domain containing 1
• Gene Aliases: GDE4
• Location: Chr.17:59220467-59275970 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GDPD1	NM_001165993.1			NP_001159465.1
	NM_001165994.1			NP_001159466.1
	NM_182569.3			NP_872375.2
	AK094770.1			BAC04419.1
	AY271346.1			AAQ01751.1
	BC034432.1			AAH34432.1
	EU192951.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1065442	Chr.17:59158105 - 59247609 on Build GRCh38	Gain	LOC105371844 GDPD1 PRR11 SMG8
nsv1062736	Chr.17:59192781 - 59393940 on Build GRCh38	Gain	YPEL2 MIR4729 GDPD1 PRR11 SMG8
nsv833500	Chr.17:59211557 - 59444989 on Build GRCh38	Loss	YPEL2 MIR4729 GDPD1 SMG8 LINC01476
esv2758699	Chr.17:59005218 - 59348273 on Build GRCh38	Gain	SKA2 YPEL2 MIR301A LOC105371844 MIR454 TRIM37 GDPD1 PRR11 SMG8
esv3573764	Chr.17:59142030 - 59424243 on Build GRCh38	Gain	SKA2 YPEL2 MIR301A MIR4729 LOC105371844 GDPD1 PRR11 SMG8
nsv1065063	Chr.17:58876760 - 59269333 on Build GRCh38	Gain	SKA2 MIR301A LOC105371844 MIR454 TRIM37 GDPD1 PRR11 PPM1E SMG8
dgv3271n100	Chr.17:59112106 - 59291909 on Build GRCh38	Gain	SKA2 MIR301A LOC105371844 MIR454 GDPD1 PRR11 SMG8
nsv575802	Chr.17:59131391 - 59266820 on Build GRCh38	Loss	SKA2 MIR301A LOC105371844 MIR454 GDPD1 PRR11 SMG8
nsv575803	Chr.17:59222156 - 59245593 on Build GRCh38	Gain	GDPD1
dgv3270n100	Chr.17:58972158 - 59269333 on Build GRCh38	Gain	SKA2 MIR301A LOC105371844 MIR454 TRIM37 GDPD1 PRR11 PPM1E SMG8

More Information

Additional Information:

For this assay, SNP(s) [rs373258599] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

phospholipase

Gene Ontology Categories:

Process(es)

lipid metabolic process

Function(s)

glycerophosphodiester phosphodiesterase activity
metal ion binding