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See other IRF3 CNV Assays ›
Gene Symbol
IRF3
Assay Reference Genome
Location

Chr.19:49660176 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04009874_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 3661

Gene Name:

 interferon regulatory factor 3

Gene Aliases:

 IIAE7

Location:

 Chr.19:49659569-49665875 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
IRF3 NM_001197122.1 NP_001184051.1
NM_001197123.1 NP_001184052.1
NM_001197124.1 NP_001184053.1
NM_001197125.1 NP_001184054.1
NM_001197126.1 NP_001184055.1
NM_001197127.1 NP_001184056.1
NM_001197128.1 NP_001184057.1
NM_001571.5 NP_001562.1
NR_045568.1
XM_006723197.1 XP_006723260.1
XM_006723198.1 XP_006723261.1
XM_006723200.1 XP_006723263.1
XM_006723201.1 XP_006723264.1
XM_006723202.2 XP_006723265.1
XM_017026766.1 XP_016882255.1
XM_017026767.1 XP_016882256.1
AA568913.1
AB102886.1 BAD89415.1
AB102887.1 BAD89416.1
AK292027.1
AK314421.1
BC000660.2 AAH00660.1
BC009395.2 AAH09395.1
BC071721.1 AAH71721.1
BM477213.1
BU859806.1
HM357932.1
HM357933.1
HM357934.1
HM357935.1
HM357936.1
HM357937.1
Z56281.1 CAA91227.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss PRR12 SCAF1 ADM5 MIR5088 IRF3 PRRG2 CPT1C PRMT1 NOSIP BCL2L12 RRAS
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss PRR12 SCAF1 ADM5 MIR5088 IRF3 PRRG2 CPT1C PRMT1 NOSIP BCL2L12 RRAS
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss VRK3 ZNF114 MED25 PLA2G4C-AS1 PTOV1 FLT3LG GYS1 MIR4324 MIR6800 KCNA7 MIR4749 NOSIP CGB5 CGB3 RPL18 CCDC155 GRIN2D SNAR-A6 SNAR-A10 MIR6798 DKKL1 MIR150 TULP2 GFY SNORD33 CGB2 SNAR-A5 EMP3 SNAR-D FCGRT CABP5 ADM5 SNAR-C1 SLC17A7 TRPM4 SIGLEC16 TEAD2 TMEM143 NUCB1-AS1 FGF21 SPHK2 SNAR-C4 SNAR-B2 GRWD1 PPP1R15A SCAF1 HRC LIN7B SNAR-A13 CD37 MIR4751 FUZ CPT1C AP2A1 BSPH1 SNAR-A1 BCAT2 PIH1D1 PNKP PLEKHA4 LOC105447645 SNORD32A HSD17B14 SNAR-A14 TSKS SNAR-G2 PRRG2 PRMT1 SNAR-A8 PTOV1-AS2 SNAR-A12 SNORD34 SULT2B1 ALDH16A1 RPL13A MIR5088 SNRNP70 SNAR-C2 IZUMO1 NUCB1 SNORD35B CA11 KDELR1 LIG1 LOC101059948 NTN5 IRF3 LHB SNAR-A11 SNAR-A3 BCL2L12 CYTH2 SNORD35A CCDC114 BAX FTL RPS11 PTOV1-AS1 ZNF473 SNAR-A2 LOC101928295 CGB1 RASIP1 RRAS AKT1S1 FUT2 TBC1D17 SNAR-A4 CGB8 DHDH C19orf68 SIGLEC11 CGB7 SNAR-A7 KCNJ14 PLA2G4C RUVBL2 FLJ26850 NTF4 MAMSTR MIR6799 SLC6A16 IL4I1 SYNGR4 CARD8-AS1 SEC1P ATF5 SNAR-A9 CARD8 PRR12 LMTK3 LOC100287477 FUT1 SNAR-C3 LOC105372430 FAM83E DBP PTH2 C19orf73 MIR4750 PPFIA3 SNAR-B1 ELSPBP1 SNAR-C5 NUP62 RCN3 SNAR-G1 SPACA4
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain PRR12 TSKS IRF3 FUZ MED25 CPT1C AP2A1 PTOV1 PRMT1 BCL2L12 PTOV1-AS2 SCAF1 ADM5 MIR5088 MIR6799 MIR6800 PTOV1-AS1 MIR4749 RRAS
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain PRR12 SCAF1 ADM5 MIR5088 IRF3 PRRG2 CPT1C PRMT1 NOSIP BCL2L12 RRAS
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion TSKS PRRG2 MED25 PTOV1 PRMT1 PTOV1-AS2 SCAF1 MIR5088 MIR6799 MIR6800 IL4I1 MIR4749 NOSIP ATF5 MIR4751 PRR12 IRF3 FUZ CPT1C AP2A1 BCL2L12 ADM5 MIR4750 PNKP PTOV1-AS1 NUP62 RRAS AKT1S1 TBC1D17
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion TSKS PRRG2 MED25 PRMT1 SNORD34 SCAF1 RPL13A MIR5088 MIR6799 MIR6800 NOSIP SNORD35B PRR12 IRF3 FUZ MIR150 CPT1C AP2A1 SNORD33 BCL2L12 FCGRT ADM5 SNORD35A RPS11 PTOV1-AS1 SNORD32A RCN3 RRAS
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss PRR12 SCAF1 IRF3 PRRG2 PRMT1 NOSIP BCL2L12 RRAS
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss SCAF1 IRF3

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More Information


Additional Information:

For this assay, SNP(s) [rs114450521] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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