Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
| NM_001288792.1 | NP_001275721.1 | |||
| NM_001288793.1 | NP_001275722.1 | |||
| NM_198481.3 | NP_940883.2 | |||
| NR_110142.1 | ||||
| XM_011526845.1 | XP_011525147.1 | |||
| XM_011526846.1 | XP_011525148.1 | |||
| XM_011526847.1 | XP_011525149.1 | |||
| XM_011526848.1 | XP_011525150.1 | |||
| XM_011526849.1 | XP_011525151.1 | |||
| XM_017026666.1 | XP_016882155.1 | |||
| AY358542.1 | AAQ88906.1 | |||
| BC100943.2 | AAI00944.1 | |||
| BQ446114.1 | ||||
| DQ479397.1 | ||||
| FJ584316.1 | ||||
| FJ584317.1 | ||||
| FJ584318.1 | ||||
| FJ584319.1 | ||||
| FJ584320.1 | ||||
| FJ882051.1 | ||||
| FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| dgv6544n54 | Chr.19:54053137 - 54055630 on Build GRCh38 | Loss |
 VSTM1
|
| nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain |
CACNG6
CACNG7
VSTM1
CACNG8
MIR935
|
| dgv6543n54 | Chr.19:54052839 - 54057172 on Build GRCh38 | Loss |
VSTM1
|
| esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion |
LILRB3
MYADM
ZNF665
MBOAT7
MIR520H
MIR518C
MIR519A1
PRPF31
MIR516B2
MIR520E
MIR526A1
VN1R4
FAM90A27P
MIR517A
ZNF331
MIR372
MIR521-2
CACNG8
MIR935
MIR523
MIR519C
MIR517B
LILRA5
MIR371A
TARM1
NDUFA3
MIR526A2
LOC284379
MIR519E
MIR519D
LOC105372457
MIR519A2
ZNF761
MIR515-2
ZNF845
MIR515-1
MIR520D
DPRX
MIR526B
MIR518D
MIR517C
NLRP12
LENG1
ZNF765
MIR1323
TFPT
VN1R2
TPM3P9
MIR516B1
MIR527
CACNG7
MIR525
CACNG6
MIR512-1
ZNF525
MIR371B
MIR4752
MIR518F
ZNF818P
OSCAR
MIR519B
ZNF813
TSEN34
MIR373
MIR516A2
MIR518A2
LILRB2
MIR1283-1
BIRC8
MIR518A1
ZNF677
MIR520F
MIR520G
MIR498
MIR524
RPS9
LILRA6
MIR520A
MIR518B
MIR516A1
PRKCG
MIR512-2
MIR1283-2
TMC4
VSTM1
CNOT3
MIR522
MIR520C
LILRB5
MIR520B
MIR521-1
MIR518E
|
| nsv498905 | Chr.19:54052271 - 54057395 on Build GRCh38 | Loss |
VSTM1
|
| nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss |
CACNG6
VSTM1
PRPF31
OSCAR
TARM1
NDUFA3
CACNG8
MIR935
TFPT
|
| nsv819771 | Chr.19:54052875 - 54057777 on Build GRCh38 | Gain |
VSTM1
|
| esv3556612 | Chr.19:54051747 - 54057746 on Build GRCh38 | Deletion |
VSTM1
|
| nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion |
VSTM1
PRPF31
OSCAR
TARM1
NDUFA3
TFPT
|
| nsv435707 | Chr.19:54050726 - 54058212 on Build GRCh38 | Deletion |
VSTM1
|
| esv2718849 | Chr.19:54052186 - 54057417 on Build GRCh38 | Deletion |
VSTM1
|
| esv27833 | Chr.19:54052449 - 54057233 on Build GRCh38 | Gain |
VSTM1
|
| dgv6545n54 | Chr.19:54053705 - 54056151 on Build GRCh38 | Loss |
VSTM1
|
| dgv6546n54 | Chr.19:54054016 - 54057172 on Build GRCh38 | Loss |
VSTM1
|
| nsv828625 | Chr.19:54051623 - 54057381 on Build GRCh38 | Loss |
VSTM1
|
| esv995580 | Chr.19:54053790 - 54056986 on Build GRCh38 | Gain |
VSTM1
|
| nsv820902 | Chr.19:54051675 - 54057381 on Build GRCh38 | Deletion |
VSTM1
|
| nsv1071550 | Chr.19:54050645 - 54057446 on Build GRCh38 | Deletion |
VSTM1
|
| nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain |
VSTM1
|
| nsv956562 | Chr.19:54052306 - 54057474 on Build GRCh38 | Deletion |
VSTM1
|
| dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion |
VSTM1
|
| nsv580137 | Chr.19:54053501 - 54058538 on Build GRCh38 | Loss |
VSTM1
|
| dgv6541n54 | Chr.19:54049610 - 54057172 on Build GRCh38 | Loss |
VSTM1
|
| esv3644779 | Chr.19:54052282 - 54057401 on Build GRCh38 | Loss |
VSTM1
|
| nsv458782 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain |
CACNG6
VSTM1
TARM1
CACNG8
MIR935
|
| nsv182 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion |
VSTM1
OSCAR
TARM1
|
| esv2595621 | Chr.19:54052577 - 54057841 on Build GRCh38 | Loss |
VSTM1
|
| esv2552009 | Chr.19:54051426 - 54057890 on Build GRCh38 | Deletion |
VSTM1
|
| esv987659 | Chr.19:54052552 - 54057223 on Build GRCh38 | Gain |
VSTM1
|
Back To TopMore Information
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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