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See other VSTM1 CNV Assays ›
Gene Symbol
VSTM1
Assay Reference Genome
Location

Chr.19:54059425 on build GRCh38
Cytoband
19q13.42
Assay ID Hs04014269_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 284415

Gene Name:

 V-set and transmembrane domain containing 1

Gene Aliases:

 SIRL-1, SIRL1, UNQ3033

Location:

 Chr.19:54040825-54063966 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VSTM1 NM_001288791.1 NP_001275720.1
NM_001288792.1 NP_001275721.1
NM_001288793.1 NP_001275722.1
NM_198481.3 NP_940883.2
NR_110142.1
XM_011526845.1 XP_011525147.1
XM_011526846.1 XP_011525148.1
XM_011526847.1 XP_011525149.1
XM_011526848.1 XP_011525150.1
XM_011526849.1 XP_011525151.1
XM_017026666.1 XP_016882155.1
AY358542.1 AAQ88906.1
BC100943.2 AAI00944.1
DQ479397.1
FJ584316.1
FJ584317.1
FJ584318.1
FJ584319.1
FJ584320.1
FJ882051.1
FN398145.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv458782 Chr.19:53961144 - 54093354 on Build GRCh38 Gain VSTM1 MIR935 CACNG6 TARM1 CACNG8
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion NDUFA3 VSTM1 PRPF31 OSCAR TARM1 TFPT
nsv182 Chr.19:54050737 - 54097924 on Build GRCh38 Deletion VSTM1 OSCAR TARM1
nsv1063127 Chr.19:53926876 - 54068977 on Build GRCh38 Gain VSTM1 MIR935 CACNG6 CACNG8 CACNG7
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion PRKCG LILRB2 VN1R4 MIR521-2 MIR518F ZNF818P MIR1283-2 MIR520G MIR1323 MIR517A MIR520H RPS9 ZNF677 MIR518B CACNG7 MIR371A LOC105372457 MIR524 MIR518A2 MIR1283-1 LENG1 MIR517C MIR516A2 MIR512-1 MIR520B CACNG6 TARM1 ZNF761 MIR519B MIR525 MIR516B1 MIR523 MIR518D MIR518E NLRP12 MIR520E LILRB5 ZNF845 MIR527 MIR515-2 TSEN34 CNOT3 MIR522 TFPT MIR371B CACNG8 BIRC8 MIR498 MIR519A2 MIR373 TPM3P9 MIR517B MBOAT7 PRPF31 MIR372 MIR520C MIR519C MIR519E MIR526A2 LOC284379 MIR518A1 MIR526A1 ZNF525 MIR516A1 LILRB3 LILRA6 MIR526B MIR4752 ZNF813 NDUFA3 VN1R2 VSTM1 MIR515-1 ZNF331 DPRX MIR935 MIR520A ZNF765 FAM90A27P MIR512-2 LILRA5 MYADM OSCAR TMC4 MIR519D MIR519A1 ZNF665 MIR518C MIR520F MIR521-1 MIR516B2 MIR520D
esv3644780 Chr.19:54057724 - 54066399 on Build GRCh38 Gain VSTM1
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss NDUFA3 VSTM1 PRPF31 OSCAR MIR935 CACNG6 TARM1 TFPT CACNG8

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More Information


Additional Information:

For this assay, SNP(s) [rs117366834] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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