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See other APC2 CNV Assays ›
Gene Symbol
APC2
Assay Reference Genome
Location

Chr.19:1450484 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04017722_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10297

Gene Name:

 APC2, WNT signaling pathway regulator

Gene Aliases:

 APCL

Location:

 Chr.19:1446268-1473244 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
APC2 NM_005883.2 NP_005874.1
XM_005259475.2 XP_005259532.1
XM_006722607.2 XP_006722670.1
XM_006722608.3 XP_006722671.2
XM_006722610.3 XP_006722673.2
AF110334.1 AAD28183.1
AL078616.1
BC032573.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv32942 Chr.19:1320268 - 1999205 on Build GRCh38 Gain+Loss KLF16 CSNK1G2-AS1 GAMT MBD3 NDUFS7 DAZAP1 CSNK1G2 LOC100288123 C19orf25 MUM1 RPS15 SCAMP4 PCSK4 REXO1 BTBD2 ADAT3 MEX3D ATP8B3 REEP6 ABHD17A MIR1909 UQCR11 ADAMTSL5 APC2 ONECUT3 TCF3 PLK5
nsv578279 Chr.19:1413575 - 1530061 on Build GRCh38 Gain RPS15 REEP6 PCSK4 ADAMTSL5 DAZAP1 C19orf25 PLK5 APC2
nsv833705 Chr.19:1380125 - 1544934 on Build GRCh38 Loss RPS15 GAMT REEP6 PCSK4 ADAMTSL5 NDUFS7 DAZAP1 C19orf25 PLK5 APC2
esv2758743 Chr.19:951641 - 1544934 on Build GRCh38 Gain+Loss CIRBP-AS1 C19orf24 GAMT POLR2E CIRBP LOC102725180 NDUFS7 DAZAP1 C19orf25 ATP5D MUM1 RPS15 TMEM259 ARHGAP45 ABCA7 PCSK4 CNN2 LOC105372235 REEP6 ADAMTSL5 CBARP APC2 GPX4 SBNO2 STK11 GRIN3B WDR18 ARID3A RNU6-2 EFNA2 MIDN PLK5
nsv953942 Chr.19:1371602 - 2057401 on Build GRCh38 Deletion KLF16 CSNK1G2-AS1 GAMT MBD3 NDUFS7 DAZAP1 CSNK1G2 LOC100288123 C19orf25 MUM1 RPS15 SCAMP4 PCSK4 REXO1 BTBD2 ADAT3 MEX3D ATP8B3 REEP6 ABHD17A MIR1909 UQCR11 ADAMTSL5 APC2 ONECUT3 MKNK2 TCF3 PLK5
nsv470105 Chr.19:1444420 - 1526614 on Build GRCh38 Gain REEP6 PCSK4 ADAMTSL5 C19orf25 PLK5 APC2

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More Information


Additional Information:

For this assay, SNP(s) [rs80271587] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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