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See other APC2 CNV Assays ›
Gene Symbol
APC2
Assay Reference Genome
Location

Chr.19:1450484 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04017722_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10297

Gene Name:

 APC2, WNT signaling pathway regulator

Gene Aliases:

 APCL

Location:

 Chr.19:1446268-1473244 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
APC2 NM_005883.2 NP_005874.1
XM_005259475.2 XP_005259532.1
XM_006722607.2 XP_006722670.1
XM_006722608.3 XP_006722671.2
XM_006722610.3 XP_006722673.2
AF110334.1 AAD28183.1
AL078616.1
BC032573.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv32942 Chr.19:1320268 - 1999205 on Build GRCh38 Gain+Loss CSNK1G2-AS1 TCF3 PCSK4 ADAMTSL5 DAZAP1 BTBD2 MEX3D LOC100288123 UQCR11 NDUFS7 ADAT3 ONECUT3 REXO1 RPS15 ATP8B3 KLF16 APC2 SCAMP4 MIR1909 ABHD17A REEP6 PLK5 C19orf25 GAMT MBD3 MUM1 CSNK1G2
nsv578279 Chr.19:1413575 - 1530061 on Build GRCh38 Gain REEP6 DAZAP1 PLK5 C19orf25 RPS15 APC2 PCSK4 ADAMTSL5
nsv833705 Chr.19:1380125 - 1544934 on Build GRCh38 Loss REEP6 DAZAP1 PLK5 C19orf25 GAMT RPS15 NDUFS7 APC2 PCSK4 ADAMTSL5
esv2758743 Chr.19:951641 - 1544934 on Build GRCh38 Gain+Loss LOC105372235 GPX4 POLR2E CNN2 PCSK4 ADAMTSL5 TMEM259 ATP5D DAZAP1 ARHGAP45 CBARP NDUFS7 CIRBP EFNA2 RPS15 APC2 ARID3A STK11 C19orf24 REEP6 CIRBP-AS1 WDR18 PLK5 ABCA7 SBNO2 C19orf25 GAMT RNU6-2 MUM1 GRIN3B MIDN LOC102725180
nsv953942 Chr.19:1371602 - 2057401 on Build GRCh38 Deletion CSNK1G2-AS1 TCF3 PCSK4 ADAMTSL5 DAZAP1 BTBD2 MEX3D LOC100288123 UQCR11 NDUFS7 ADAT3 ONECUT3 REXO1 RPS15 ATP8B3 KLF16 APC2 SCAMP4 MIR1909 ABHD17A REEP6 PLK5 C19orf25 GAMT MKNK2 MBD3 MUM1 CSNK1G2
nsv817811 Chr.19:1444420 - 1475392 on Build GRCh38 Loss C19orf25 APC2

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More Information


Additional Information:

For this assay, SNP(s) [rs80271587] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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