accessibility menu, dialog, popup

UserName
Viewing profile as user:

Please enter the information below and press OK to send your cart to Core Services for purchase.

    

System Message

OKCancel
LOADING ...
See other LIG1 CNV Assays ›
Gene Symbol
LIG1
Assay Reference Genome
Location

Chr.19:48125461 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04029111_cn
Size
Availability Made To Order
Catalog # 4400291
Price
Your Price
Online offer:
Check your price ›

Assay Details

Target Gene Details

Entrez Gene ID:

 3978

Gene Name:

 DNA ligase 1

Gene Aliases:

 -

Location:

 Chr.19:48115445-48170603 on Build GRCh38

Assay Gene Location:

 Within Intron 22
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIG1 NM_000234.2 NP_000225.1
NM_001289063.1 NP_001275992.1
NM_001289064.1 NP_001275993.1
NM_001320970.1 NP_001307899.1
NM_001320971.1 NP_001307900.1
NR_110296.1
NR_135497.1
NR_135498.1
NR_135499.1
NR_135500.1
NR_135501.1
XM_017026809.1 XP_016882298.1
AB208791.1 BAD92028.1
AK225863.1
AK297296.1
AK300370.1
AK300607.1
AK314210.1
BC108318.1 AAI08319.1
BC110622.2 AAI10623.1
M36067.1 AAA59518.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833853 Chr.19:47982539 - 48184317 on Build GRCh38 Loss C19orf68 CABP5 ELSPBP1 PLA2G4C-AS1 BSPH1 PLA2G4C LIG1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss RRAS LOC101059948 FTL LIN7B SNAR-A10 ELSPBP1 PRR12 SNAR-B1 AKT1S1 HSD17B14 RPL13A SPHK2 PTOV1-AS2 SNAR-G1 SNORD35B VRK3 C19orf73 SNAR-C5 KDELR1 NUCB1 SPACA4 TRPM4 ALDH16A1 PTH2 SNAR-A1 FUT2 SYNGR4 CA11 PPFIA3 SNAR-C1 CCDC155 LIG1 BAX NUCB1-AS1 SLC17A7 TEAD2 NTN5 LOC105372430 TBC1D17 SLC6A16 SNAR-A11 IL4I1 CCDC114 GRIN2D MIR150 GRWD1 EMP3 DKKL1 CYTH2 SNAR-C4 FUZ MIR6800 PTOV1-AS1 RUVBL2 SNAR-A9 CGB8 SULT2B1 MIR6798 PLA2G4C-AS1 SNAR-B2 RCN3 BCL2L12 SNAR-A14 MED25 SNAR-A6 DBP SNAR-A5 FAM83E RPS11 FLJ26850 PLEKHA4 SNAR-A2 PRMT1 SIGLEC11 KCNA7 RASIP1 SNAR-C3 SNRNP70 CGB2 SCAF1 SEC1P FGF21 IZUMO1 SNORD33 AP2A1 SNAR-A4 ATF5 CGB3 MIR6799 DHDH PRRG2 MAMSTR ADM5 TMEM143 PIH1D1 IRF3 SNORD34 CGB1 NUP62 SNAR-C2 RPL18 FUT1 LOC105447645 CABP5 SNORD35A SNAR-D CD37 MIR4750 CGB5 PLA2G4C HRC FLT3LG NTF4 MIR4751 PNKP KCNJ14 TULP2 LHB SNAR-A7 MIR4324 C19orf68 NOSIP FCGRT SNAR-A13 LMTK3 PTOV1 BSPH1 CGB7 SNORD32A SNAR-A12 LOC100287477 TSKS PPP1R15A LOC101928295 ZNF114 CPT1C ZNF473 SNAR-A3 MIR5088 SNAR-A8 GYS1 GFY BCAT2 SNAR-G2 CARD8-AS1 MIR4749 CARD8 SIGLEC16
esv34181 Chr.19:48009377 - 48416682 on Build GRCh38 Loss ZNF114 ELSPBP1 PLA2G4C-AS1 CCDC114 GRIN2D SYNGR4 EMP3 C19orf68 CABP5 CARD8-AS1 CARD8 PLA2G4C LIG1 KDELR1 TMEM143
nsv953596 Chr.19:48120744 - 48134943 on Build GRCh38 Deletion LIG1

Back To Top

More Information


Additional Information:

For this assay, SNP(s) [rs66525371] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA ligase

Gene Ontology Categories:

Function(s) Process(es)


Back To Top

Related Products