Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 20 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C-AS1
ELSPBP1
C19orf68
BSPH1
CABP5
PLA2G4C
LIG1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
CGB5
LIN7B
ELSPBP1
SIGLEC16
PTOV1-AS2
SPHK2
SNAR-A11
LMTK3
MIR5088
KDELR1
FGF21
DHDH
SNAR-D
RASIP1
PRMT1
SLC17A7
NUCB1
FAM83E
SNAR-A12
GFY
SNAR-A7
CCDC155
PPP1R15A
LOC101059948
RPL13A
LOC105372430
SNAR-G1
SNAR-C1
SNAR-A3
SNAR-C5
SNORD35B
TRPM4
GYS1
NTF4
AP2A1
CA11
LOC100287477
PPFIA3
VRK3
FUT1
EMP3
FCGRT
TSKS
CCDC114
SULT2B1
SNAR-C4
SNAR-A4
GRWD1
IZUMO1
LOC101928295
SNAR-A5
MIR4750
CD37
BCAT2
SNAR-A2
FUT2
SCAF1
DBP
CGB8
SNAR-A1
CGB3
SNORD33
SNAR-A14
CGB1
TMEM143
SNRNP70
AKT1S1
CPT1C
RCN3
SNORD32A
CYTH2
SNAR-A6
SNAR-C2
FUZ
MAMSTR
KCNA7
FTL
IL4I1
MIR4324
ALDH16A1
BCL2L12
SNAR-C3
NTN5
LOC105447645
SEC1P
SNAR-G2
SNAR-B1
MIR4749
SNAR-A13
ZNF114
NOSIP
RPS11
PIH1D1
RRAS
KCNJ14
MIR6799
SYNGR4
FLJ26850
SLC6A16
CABP5
MED25
SNORD35A
PLEKHA4
RUVBL2
FLT3LG
MIR150
PTOV1
CARD8
PLA2G4C
TBC1D17
PRR12
NUP62
TEAD2
C19orf68
SPACA4
BAX
NUCB1-AS1
PLA2G4C-AS1
ADM5
SNORD34
TULP2
PNKP
SNAR-A8
RPL18
HRC
MIR6800
ZNF473
HSD17B14
SIGLEC11
SNAR-A10
MIR4751
IRF3
C19orf73
MIR6798
CARD8-AS1
PTOV1-AS1
DKKL1
ATF5
GRIN2D
PRRG2
BSPH1
PTH2
SNAR-B2
CGB2
SNAR-A9
CGB7
LHB
LIG1
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
ELSPBP1
C19orf68
SYNGR4
EMP3
CARD8-AS1
GRIN2D
CABP5
TMEM143
KDELR1
PLA2G4C-AS1
CCDC114
ZNF114
CARD8
PLA2G4C
LIG1
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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