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See other TCFL5 CNV Assays ›
Gene Symbol
TCFL5
Assay Reference Genome
Location

Chr.20:62850927 on build GRCh38
Cytoband
20q13.33
Assay ID Hs04045599_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10732

Gene Name:

 transcription factor like 5

Gene Aliases:

 CHA, E2BP-1, Figlb, bHLHe82

Location:

 Chr.20:62841014-62861763 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TCFL5 NM_006602.3 NP_006593.2
XM_005260185.3 XP_005260242.1
XM_011528497.2 XP_011526799.1
XM_011528499.1 XP_011526801.1
AB012124.1 BAA36557.1
AF070992.1 AAD53986.1
AJ271337.1 CAC24700.1
BC046933.1 AAH46933.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv834027 Chr.20:62707655 - 62874914 on Build GRCh38 Loss LOC107985428 NTSR1 MRGBP COL9A3 OGFR DPH3P1 LINC00659 LOC107987285 OGFR-AS1 TCFL5
nsv828794 Chr.20:62832958 - 62880035 on Build GRCh38 Loss COL9A3 DIDO1 DPH3P1 TCFL5
nsv9825 Chr.20:62775470 - 63601330 on Build GRCh38 Gain DPH3P1 MIR124-3 LINC01056 OGFR-AS1 HAR1A TCFL5 FNDC11 NKAIN4 MRGBP COL9A3 OGFR FLJ16779 PPDPF LOC102723788 LOC107985428 SRMS GID8 DIDO1 LOC107985425 LOC100130152 ARFGAP1 CHRNA4 LOC100130587 HELZ2 COL20A1 YTHDF1 BHLHE23 SLC17A9 PTK6 KCNQ2 LOC63930 BIRC7 GMEB2 LINC00029 LINC00659 MIR4326 HAR1B EEF1A2 MIR3196
nsv428380 Chr.20:62632018 - 62935383 on Build GRCh38 Loss LOC107985428 SLCO4A1-AS1 NTSR1 DIDO1 DPH3P1 SLCO4A1 LOC107987285 OGFR-AS1 TCFL5 MRGBP COL9A3 OGFR LINC00659

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More Information


Additional Information:

For this assay, SNP(s) [rs66634465] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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