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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1557867 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04199907_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3A LOC102724312 ATAD3B VWA1 ATAD3C TMEM88B TMEM240 LOC107985729 SSU72 ANKRD65
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CCNL2 HES4 MMP23B SDF4 FAM132A MIB2 TAS1R3 ATAD3B LINC01128 VWA1 LOC107985729 MIR200B ANKRD65 SAMD11 DVL1 ACAP3 NOC2L MXRA8 TMEM88B LOC100288069 LOC100288175 TNFRSF4 MMP23A UBE2J2 LINC01342 ISG15 LOC105378948 NADK MIR429 SLC35E2 KLHL17 TTLL10-AS1 FNDC10 AURKAIP1 CDK11B PUSL1 MIR6808 TNFRSF18 LOC100130417 LOC102724312 MRPL20 LOC148413 TMEM240 LOC284600 AGRN SCNN1D SLC35E2B LINC00115 CPSF3L CDK11A LOC107985728 C1orf159 FAM87B LOC100287934 PERM1 B3GALT6 TTLL10 PLEKHN1 MIR6726 SSU72 MIR6727 ATAD3A CPTP ATAD3C RNF223 FAM41C MIR200A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CCNL2 HES4 MMP23B SDF4 ATAD3B VWA1 MIR200B ANKRD65 DVL1 LOC100129534 MORN1 ACAP3 TMEM88B LOC100288069 LOC100288175 LOC100132287 FAAP20 LINC01342 LOC105378948 NADK MIR429 WASH7P LOC100506504 TTLL10-AS1 FNDC10 AURKAIP1 CDK11B LOC102724312 LOC148413 AGRN CALML6 SCNN1D TMEM52 SLC35E2B LOC102725121 LOC101928626 LOC107985728 FAM87B MIR6723 PERM1 TTLL10 MIR6726 LOC105378949 SSU72 LOC100134822 MIR6727 OR4F29 LOC729737 MIR1302-2 OR4F16 LOC100133331 RNF223 FAM132A MIB2 TAS1R3 LINC01128 LOC105378947 LOC107985729 SAMD11 SKI NOC2L MXRA8 TNFRSF4 GABRD LOC105378592 MMP23A UBE2J2 ISG15 SLC35E2 GNB1 KLHL17 MIR6859-1 CFAP74 MTND1P23 PUSL1 MIR6808 TNFRSF18 LOC100130417 OR4F5 MRPL20 TMEM240 LOC284600 LINC00115 CPSF3L CDK11A C1orf159 LOC100287934 LOC105378591 B3GALT6 MIR6859-2 PLEKHN1 FAM138A LOC105378589 ATAD3A CPTP PRKCZ ATAD3C LOC107984841 DDX11L1 FAM41C MIR200A MTND2P28
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TNFRSF18 CCNL2 MMP23B SDF4 LOC102724312 FAM132A MIB2 MRPL20 TAS1R3 ATAD3B LOC148413 VWA1 TMEM240 LOC107985729 MIR200B ANKRD65 SCNN1D DVL1 ACAP3 MXRA8 CPSF3L TMEM88B TNFRSF4 C1orf159 B3GALT6 TTLL10 MIR6726 UBE2J2 LINC01342 SSU72 MIR429 MIR6727 ATAD3A CPTP ATAD3C TTLL10-AS1 FNDC10 AURKAIP1 CDK11B MIR200A PUSL1 MIR6808
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain CCNL2 LOC102724312 MRPL20 ATAD3B LOC148413 VWA1 TMEM240 LOC107985729 SSU72 ANKRD65 ATAD3A ATAD3C TMEM88B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss CCNL2 MMP23B LOC102724312 MIB2 MRPL20 ATAD3B LOC148413 VWA1 TMEM240 LOC107985729 ANKRD65 CALML6 TMEM52 SLC35E2B TMEM88B CDK11A GABRD LOC105378591 MMP23A LOC105378949 LOC105378589 SSU72 NADK ATAD3A SLC35E2 GNB1 PRKCZ ATAD3C FNDC10 CFAP74 CDK11B

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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