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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1547294 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04204776_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss LOC102724312 TMEM88B LOC107985729 TMEM240 ANKRD65 SSU72 ATAD3A ATAD3C VWA1 ATAD3B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR6808 PLEKHN1 MIR6727 NADK ATAD3C VWA1 HES4 MIR200B FAM132A SSU72 SLC35E2B CDK11A SAMD11 LOC100288069 CCNL2 TTLL10 PUSL1 ATAD3A MRPL20 MIR6726 LOC148413 TMEM240 MXRA8 LOC284600 KLHL17 LOC100288175 TAS1R3 NOC2L SLC35E2 TNFRSF4 FAM41C SDF4 AURKAIP1 ANKRD65 TTLL10-AS1 ATAD3B FAM87B LOC105378948 LINC01128 LINC00115 DVL1 PERM1 TMEM88B B3GALT6 LOC107985729 MIB2 MMP23A CPSF3L CDK11B SCNN1D FNDC10 MMP23B ISG15 TNFRSF18 LOC102724312 LOC100287934 MIR429 LOC100130417 LINC01342 MIR200A LOC107985728 RNF223 UBE2J2 AGRN CPTP C1orf159 ACAP3
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100506504 WASH7P NADK OR4F16 HES4 MTND2P28 MIR200B OR4F5 FAM132A GNB1 CDK11A OR4F29 LOC100288069 TTLL10 ATAD3A LOC148413 LOC105378589 TMEM240 KLHL17 TAS1R3 NOC2L SLC35E2 FAM41C SDF4 AURKAIP1 GABRD LOC100133331 ATAD3B DVL1 PERM1 TMEM88B B3GALT6 LOC107985729 LOC107984841 LOC100134822 MMP23B ISG15 TNFRSF18 MIR6723 LOC100130417 LINC01342 PRKCZ LOC107985728 CFAP74 TMEM52 LOC100129534 LOC101928626 C1orf159 LOC105378592 MIR6859-1 MIR6808 PLEKHN1 MIR6727 ATAD3C VWA1 MIR6859-2 CALML6 LOC729737 SSU72 SKI SLC35E2B SAMD11 LOC105378947 CCNL2 PUSL1 MRPL20 MIR6726 LOC102725121 MTND1P23 MXRA8 LOC284600 DDX11L1 LOC100288175 TNFRSF4 LOC100132287 ANKRD65 TTLL10-AS1 MIR1302-2 FAM87B LOC105378948 LINC01128 MORN1 LINC00115 FAM138A MIB2 MMP23A CPSF3L CDK11B SCNN1D FNDC10 LOC102724312 LOC100287934 MIR429 LOC105378949 LOC105378591 MIR200A FAAP20 RNF223 UBE2J2 AGRN CPTP ACAP3
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR6808 TNFRSF4 MIR6727 SDF4 AURKAIP1 ANKRD65 ATAD3C VWA1 TTLL10-AS1 ATAD3B MIR200B DVL1 TMEM88B B3GALT6 LOC107985729 MIB2 FAM132A CPSF3L CDK11B SSU72 SCNN1D FNDC10 MMP23B TNFRSF18 LOC102724312 MIR429 LINC01342 CCNL2 TTLL10 PUSL1 ATAD3A MRPL20 MIR200A MIR6726 LOC148413 TMEM240 MXRA8 UBE2J2 CPTP C1orf159 ACAP3 TAS1R3
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC102724312 ANKRD65 CCNL2 ATAD3A MRPL20 ATAD3C VWA1 ATAD3B LOC148413 TMEM88B LOC107985729 TMEM240 SSU72
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss SLC35E2 NADK ANKRD65 GABRD ATAD3C VWA1 ATAD3B CALML6 TMEM88B LOC107985729 MIB2 MMP23A CDK11B SSU72 GNB1 SLC35E2B FNDC10 CDK11A MMP23B LOC102724312 LOC105378949 CCNL2 ATAD3A MRPL20 LOC105378591 PRKCZ LOC148413 CFAP74 TMEM52 LOC105378589 TMEM240

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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