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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1547294 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04204776_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3C ATAD3B TMEM88B TMEM240 LOC107985729 SSU72 ATAD3A VWA1 ANKRD65 LOC102724312
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC01342 LOC107985728 LOC107985729 SSU72 MIR200A LOC284600 LINC00115 PUSL1 TNFRSF18 MIB2 PERM1 SAMD11 LOC100287934 TTLL10-AS1 MIR6808 MMP23B CCNL2 ATAD3C FAM87B SLC35E2B FAM41C CDK11A SCNN1D MXRA8 LOC100130417 VWA1 LOC102724312 FAM132A MIR6727 LOC105378948 B3GALT6 SLC35E2 MRPL20 TMEM240 MMP23A NADK UBE2J2 LOC100288069 C1orf159 ACAP3 LINC01128 TTLL10 LOC148413 DVL1 FNDC10 ATAD3B PLEKHN1 CPTP RNF223 ANKRD65 AGRN CPSF3L TAS1R3 TNFRSF4 ISG15 SDF4 AURKAIP1 MIR429 MIR6726 HES4 MIR200B TMEM88B NOC2L ATAD3A LOC100288175 CDK11B KLHL17
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100133331 LOC107985728 LOC107985729 MIR200A LOC284600 PUSL1 LOC107984841 TNFRSF18 MIB2 LOC100287934 TTLL10-AS1 MMP23B FAM87B LOC100134822 WASH7P FAM41C SCNN1D OR4F16 FAAP20 LOC105378947 OR4F29 LOC729737 LOC105378948 B3GALT6 SLC35E2 MRPL20 MMP23A NADK LOC100288069 ACAP3 MTND1P23 MIR6859-2 GNB1 TTLL10 LOC148413 DDX11L1 DVL1 FNDC10 ATAD3B CPTP AGRN CPSF3L TMEM52 FAM138A SDF4 AURKAIP1 MIR429 HES4 LOC100132287 MTND2P28 LOC102725121 MIR200B MIR6859-1 PRKCZ NOC2L LOC100129534 LOC100288175 CDK11B LINC01342 SSU72 CFAP74 LINC00115 CALML6 LOC105378949 PERM1 SAMD11 MIR6808 OR4F5 CCNL2 ATAD3C LOC105378589 MORN1 LOC100506504 SLC35E2B CDK11A LOC105378591 MXRA8 LOC100130417 VWA1 MIR1302-2 LOC102724312 LOC101928626 FAM132A MIR6727 GABRD TMEM240 UBE2J2 C1orf159 LINC01128 PLEKHN1 RNF223 ANKRD65 SKI TAS1R3 MIR6723 TNFRSF4 ISG15 MIR6726 LOC105378592 TMEM88B ATAD3A KLHL17
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LINC01342 B3GALT6 MRPL20 TMEM240 LOC107985729 SSU72 UBE2J2 C1orf159 MIR200A ACAP3 PUSL1 TTLL10 LOC148413 DVL1 TNFRSF18 FNDC10 MIB2 ATAD3B CPTP TTLL10-AS1 MIR6808 ANKRD65 MMP23B CCNL2 CPSF3L TAS1R3 ATAD3C TNFRSF4 SCNN1D SDF4 AURKAIP1 MIR429 MIR6726 MIR200B MXRA8 TMEM88B ATAD3A VWA1 LOC102724312 CDK11B FAM132A MIR6727
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ATAD3C MRPL20 TMEM240 LOC107985729 SSU72 LOC148413 ATAD3B TMEM88B ATAD3A VWA1 ANKRD65 LOC102724312 CCNL2
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss GABRD SLC35E2 MRPL20 TMEM240 LOC107985729 MMP23A NADK SSU72 CFAP74 CALML6 GNB1 LOC148413 LOC105378949 FNDC10 MIB2 ATAD3B ANKRD65 MMP23B CCNL2 TMEM52 ATAD3C LOC105378589 SLC35E2B CDK11A LOC105378591 TMEM88B PRKCZ ATAD3A VWA1 LOC102724312 CDK11B

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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