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See other LOC101927401 CNV Assays ›
Gene Symbol
LOC101927401
Assay Reference Genome
Location

Chr.1:228369429 on build GRCh38
Cytoband
1q42.13
Assay ID Hs04206635_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 101927401

Gene Name:

 MAGE-like protein 2

Gene Aliases:

 -

Location:

 Chr.1:228360893-228369935 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC101927401 XM_011544350.2 1 507 XP_011542652.1
XM_017003091.1 1 507 XP_016858580.1
XM_017003092.1 1 507 XP_016858581.1

Target Gene Details

Entrez Gene ID:

 84033

Gene Name:

 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF

Gene Aliases:

 ARHGEF30, UNC89

Location:

 Chr.1:228208013-228381431 on Build GRCh38

Assay Gene Location:

 Within Intron 106
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
OBSCN NM_001098623.2 NP_001092093.2
NM_001271223.2 NP_001258152.2
XM_005273287.4 XP_005273344.1
XM_005273291.4 XP_005273348.1
XM_005273298.4 XP_005273355.1
XM_005273307.4 XP_005273364.1
XM_006711822.3 XP_006711885.1
XM_006711823.3 XP_006711886.1
XM_011544297.2 XP_011542599.1
XM_011544299.2 XP_011542601.1
XM_017002443.1 XP_016857932.1
XM_017002444.1 XP_016857933.1
XM_017002445.1 XP_016857934.1
XM_017002446.1 XP_016857935.1
XM_017002447.1 XP_016857936.1
XM_017002448.1 XP_016857937.1
XM_017002449.1 XP_016857938.1
XM_017002450.1 XP_016857939.1
XM_017002451.1 XP_016857940.1
XM_017002452.1 XP_016857941.1
XM_017002453.1 XP_016857942.1
XM_017002454.1 XP_016857943.1
XM_017002455.1 XP_016857944.1
XM_017002456.1 XP_016857945.1
XM_017002457.1 XP_016857946.1
XM_017002458.1 XP_016857947.1
XM_017002459.1 XP_016857948.1
XM_017002460.1 XP_016857949.1
XM_017002461.1 XP_016857950.1
XM_017002462.1 XP_016857951.1
XM_017002463.1 XP_016857952.1
XM_017002464.1 XP_016857953.1
XM_017002465.1 XP_016857954.1
XM_017002466.1 XP_016857955.1
XM_017002467.1 XP_016857956.1
XM_017002468.1 XP_016857957.1
XM_017002469.1 XP_016857958.1
XM_017002470.1 XP_016857959.1
AB046776.1 BAB13382.1
AB046859.2 BAB13465.2
AM231061.1 CAJ76912.1
DQ400343.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv826908 Chr.1:227707685 - 228503399 on Build GRCh38 Gain MIR3620 HIST3H3 LOC101927401 LOC100506571 RNF187 LOC105373289 PRSS38 HIST3H2BB OBSCN LOC107985355 MRPL55 IBA57-AS1 GJC2 GUK1 LOC101060022 WNT3A TRIM17 MIR5008 TRIM11 MIR6742 WNT9A C1orf145 JMJD4 C1orf35 ARF1 IBA57 HIST3H2A MIR4666A SNAP47
esv32853 Chr.1:227692415 - 228670462 on Build GRCh38 Gain RNA5S11 RNA5S3 RNA5S8 LOC105373289 PRSS38 DUSP5P1 RNA5S2 LOC107985355 RNA5S9 IBA57-AS1 GJC2 RNA5S10 RNA5S15 LOC101060022 RNA5S14 MIR5008 TRIM11 MIR6742 C1orf145 C1orf35 RNA5S12 ARF1 IBA57 HIST3H2A RNA5S17 MIR4666A MIR3620 HIST3H3 LOC101927401 BTNL10 RNA5S13 LOC100506571 RNF187 RNA5S16 HIST3H2BB RNA5S5 OBSCN RHOU MRPL55 RNA5S4 RNA5S1 RNA5S6 GUK1 WNT3A RNA5S7 TRIM17 WNT9A JMJD4 LOC105373132 SNAP47
nsv517545 Chr.1:228268446 - 228498298 on Build GRCh38 Loss HIST3H2BB OBSCN HIST3H3 LOC101927401 HIST3H2A TRIM17 TRIM11 MIR6742 RNF187 MIR4666A
nsv1013500 Chr.1:228271433 - 228713854 on Build GRCh38 Gain RNA5S11 HIST3H3 LOC101927401 BTNL10 RNA5S13 RNA5S3 RNF187 RNA5S16 RNA5S8 HIST3H2BB RNA5S5 OBSCN DUSP5P1 RNA5S2 RHOU RNA5S9 RNA5S4 RNA5S1 RNA5S10 RNA5S6 RNA5S15 RNA5S7 TRIM17 RNA5S14 TRIM11 MIR6742 RNA5S12 LOC105373132 HIST3H2A RNA5S17 MIR4666A
nsv827019 Chr.1:228126466 - 228463319 on Build GRCh38 Loss HIST3H3 LOC101927401 GUK1 TRIM17 TRIM11 MIR6742 C1orf145 HIST3H2BB OBSCN IBA57 HIST3H2A MIR4666A IBA57-AS1 GJC2
nsv523935 Chr.1:227850423 - 228494048 on Build GRCh38 Loss MIR3620 HIST3H3 LOC101927401 LOC100506571 RNF187 HIST3H2BB OBSCN LOC107985355 MRPL55 IBA57-AS1 GJC2 GUK1 LOC101060022 WNT3A TRIM17 MIR5008 TRIM11 MIR6742 WNT9A C1orf145 C1orf35 ARF1 IBA57 HIST3H2A MIR4666A
nsv470780 Chr.1:228276547 - 228419264 on Build GRCh38 Loss OBSCN LOC101927401 TRIM17 TRIM11 MIR6742
nsv508697 Chr.1:228352336 - 228434913 on Build GRCh38 Deletion OBSCN HIST3H3 LOC101927401 TRIM17 TRIM11 MIR6742
nsv952140 Chr.1:228331100 - 228380999 on Build GRCh38 Deletion OBSCN LOC101927401

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