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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1229592 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04211933_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication SDF4 AGRN LOC100288175 C1orf159 MIR6727 CPTP UBE2J2 LOC105378948 MIR200A TAS1R3 CPSF3L LINC01342 TTLL10 B3GALT6 TNFRSF18 SCNN1D ACAP3 RNF223 TTLL10-AS1 PUSL1 MIR429 TNFRSF4 FAM132A MIR200B MIR6726
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain B3GALT6 SDF4
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC148413 MMP23B NOC2L CDK11A ATAD3A KLHL17 FAM87B LOC100288175 C1orf159 MIR6727 PERM1 LOC100288069 ANKRD65 VWA1 LOC105378948 ATAD3C PLEKHN1 SSU72 CPSF3L LINC01342 CCNL2 TTLL10 FAM41C MRPL20 HES4 LOC107985728 ACAP3 NADK RNF223 SAMD11 FNDC10 TTLL10-AS1 SLC35E2 ATAD3B PUSL1 CDK11B MIR429 MIR6808 TNFRSF4 FAM132A MIR200B SLC35E2B DVL1 SDF4 AURKAIP1 AGRN LOC284600 LOC107985729 CPTP UBE2J2 MIR200A ISG15 TAS1R3 TMEM88B LOC100287934 MXRA8 LOC102724312 LINC00115 MIB2 B3GALT6 TNFRSF18 MMP23A SCNN1D TMEM240 LOC100130417 LINC01128 MIR6726
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC148413 NOC2L CDK11A KLHL17 LOC100506504 LOC100288175 MTND2P28 C1orf159 MIR6727 PERM1 SSU72 CPSF3L FAAP20 MIR1302-2 CCNL2 MRPL20 LOC107985728 LOC107984841 ACAP3 NADK OR4F29 SKI RNF223 CFAP74 TTLL10-AS1 ATAD3B CDK11B MIR6808 TNFRSF4 MIR6859-2 MIR200B SLC35E2B LOC100134822 DVL1 LOC105378592 MIR6723 GABRD OR4F5 MIR200A ISG15 TAS1R3 TMEM88B LOC100287934 MIR6859-1 LINC00115 MIB2 B3GALT6 LOC105378947 TNFRSF18 LOC729737 SCNN1D TMEM240 LOC100130417 LOC105378589 WASH7P MMP23B LOC100132287 ATAD3A MORN1 FAM87B LOC100288069 ANKRD65 VWA1 TMEM52 LOC105378948 ATAD3C PLEKHN1 LINC01342 TTLL10 FAM41C HES4 LOC100133331 LOC101928626 SAMD11 FNDC10 SLC35E2 PUSL1 DDX11L1 MIR429 FAM132A FAM138A LOC105378591 GNB1 OR4F16 SDF4 AURKAIP1 AGRN LOC105378949 LOC284600 PRKCZ LOC102725121 LOC107985729 CALML6 CPTP UBE2J2 MXRA8 LOC102724312 LOC100129534 MMP23A MTND1P23 LINC01128 MIR6726
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss B3GALT6 SDF4 UBE2J2 FAM132A MIR6726 SCNN1D ACAP3
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss NOC2L SDF4 AGRN KLHL17 FAM87B LOC100288175 LOC284600 C1orf159 PERM1 UBE2J2 LOC105378948 MIR200A ISG15 PLEKHN1 LINC01342 LINC00115 TTLL10 FAM41C B3GALT6 HES4 LOC107985728 TNFRSF18 LOC100130417 RNF223 SAMD11 TTLL10-AS1 MIR429 TNFRSF4 FAM132A MIR200B LINC01128
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC148413 MMP23B DVL1 ATAD3A SDF4 AURKAIP1 C1orf159 MIR6727 LOC107985729 ANKRD65 VWA1 CPTP UBE2J2 MIR200A TAS1R3 TMEM88B ATAD3C SSU72 CPSF3L LINC01342 MXRA8 LOC102724312 CCNL2 TTLL10 MIB2 MRPL20 B3GALT6 TNFRSF18 SCNN1D ACAP3 TMEM240 FNDC10 TTLL10-AS1 ATAD3B PUSL1 CDK11B MIR429 MIR6808 TNFRSF4 FAM132A MIR200B MIR6726
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC148413 NOC2L DVL1 SDF4 AURKAIP1 AGRN KLHL17 LOC100288175 LOC284600 C1orf159 MIR6727 PERM1 ANKRD65 CPTP UBE2J2 LOC105378948 MIR200A ISG15 TAS1R3 TMEM88B PLEKHN1 CPSF3L LINC01342 MXRA8 CCNL2 TTLL10 MRPL20 B3GALT6 HES4 LOC107985728 TNFRSF18 SCNN1D ACAP3 LOC100130417 RNF223 SAMD11 TTLL10-AS1 PUSL1 MIR429 MIR6808 TNFRSF4 FAM132A MIR200B MIR6726
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 TTLL10 B3GALT6 SDF4 TNFRSF18 SCNN1D C1orf159 RNF223 TTLL10-AS1 MIR429 TNFRSF4 UBE2J2 LOC105378948 MIR200A FAM132A MIR200B
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss LINC01342 TTLL10 B3GALT6 SDF4 TNFRSF18 SCNN1D ACAP3 C1orf159 RNF223 TTLL10-AS1 MIR429 TNFRSF4 UBE2J2 MIR200A FAM132A MIR200B MIR6726
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L TTLL10 B3GALT6 SDF4 TNFRSF18 SCNN1D ACAP3 MIR6727 TTLL10-AS1 PUSL1 MIR429 TNFRSF4 UBE2J2 MIR200A FAM132A MIR200B MIR6726
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TTLL10 B3GALT6 TNFRSF4 SDF4 TNFRSF18

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