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See other ARHGEF4 CNV Assays ›
Gene Symbol
ARHGEF4
Assay Reference Genome
Location

Chr.2:130849505 on build GRCh38
Cytoband
2q21.1
Assay ID Hs04232427_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 50649

Gene Name:

 Rho guanine nucleotide exchange factor 4

Gene Aliases:

 ASEF, ASEF1, GEF4, STM6

Location:

 Chr.2:130836916-131047253 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARHGEF4 XM_005263681.1 XP_005263738.1
XM_005263685.3 XP_005263742.1
XM_011511274.2 XP_011509576.1
XM_017004231.1 XP_016859720.1
AK127124.1

Target Gene Details

Entrez Gene ID:

 653269

Gene Name:

 POTE ankyrin domain family member I

Gene Aliases:

 POTE2beta

Location:

 Chr.2:130462245-131626428 on Build GRCh38

Assay Gene Location:
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
POTEI

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4074n100 Chr.2:130550793 - 131291209 on Build GRCh38 Gain POTEJ POTEE TISP43 CYP4F30P PLEKHB2 FAM168B CFC1 ARHGEF4 AMER3 POTEI GPR148 LOC440910
dgv731e199 Chr.2:130678437 - 131300107 on Build GRCh38 Deletion POTEE CYP4F30P PLEKHB2 FAM168B ARHGEF4 AMER3 POTEI GPR148 LOC440910
esv2670824 Chr.2:130625264 - 131605218 on Build GRCh38 Deletion POTEJ LINC01120 WTH3DI CCDC74A FAM168B AMER3 POTEI MIR4784 POTEKP TUBA3D LOC440910 POTEE LOC150776 CYP4F30P PLEKHB2 NOC2LP2 ARHGEF4 GPR148 MZT2A
nsv1014723 Chr.2:130720375 - 131379551 on Build GRCh38 Loss POTEE PLEKHB2 WTH3DI FAM168B ARHGEF4 AMER3 POTEI GPR148 LOC440910
nsv2925 Chr.2:130841107 - 130887218 on Build GRCh38 Deletion ARHGEF4 POTEI
nsv517274 Chr.2:130845653 - 130865593 on Build GRCh38 Loss ARHGEF4 POTEI
esv3893337 Chr.2:130722838 - 131194387 on Build GRCh38 Loss PLEKHB2 FAM168B ARHGEF4 AMER3 POTEI GPR148
dgv616e201 Chr.2:130674635 - 131312550 on Build GRCh38 Deletion POTEE CYP4F30P PLEKHB2 FAM168B ARHGEF4 AMER3 POTEI GPR148 LOC440910
nsv583135 Chr.2:130724905 - 131194388 on Build GRCh38 Loss PLEKHB2 FAM168B ARHGEF4 AMER3 POTEI GPR148
nsv524021 Chr.2:130724906 - 131553515 on Build GRCh38 Loss LINC01120 WTH3DI CCDC74A FAM168B AMER3 POTEI MIR4784 TUBA3D LOC440910 POTEE LOC150776 PLEKHB2 NOC2LP2 ARHGEF4 GPR148 MZT2A
nsv10177 Chr.2:130849514 - 130851657 on Build GRCh38 Loss ARHGEF4 POTEI
esv2760576 Chr.2:130634172 - 131521752 on Build GRCh38 Gain+Loss POTEJ LINC01120 WTH3DI FAM168B AMER3 POTEI MIR4784 TUBA3D LOC440910 POTEE LOC150776 CYP4F30P PLEKHB2 NOC2LP2 ARHGEF4 GPR148 MZT2A
esv2759092 Chr.2:129589265 - 132440430 on Build GRCh38 Gain+Loss POTEJ LINC01120 MIR663B POTEKP LOC440910 LOC101927924 LOC150776 LOC107985778 LOC646743 PTPN18 CYP4F62P TISP43 PLEKHB2 FAM201B LOC389033 FAR2P2 RAB6C WTH3DI CFC1B CFC1 AMER3 MIR4784 SMPD4 CYP4F30P IMP4 NOC2LP2 GPR148 ANKRD30BL TUBA3E MED15P9 CCDC74A POTEI LOC100507460 CCDC74B POTEF FAR2P1 LINC01087 MZT2A FAM168B GPR39 MZT2B C2orf27B TUBA3D CCDC115 POTEE ZNF806 C2orf27A NOC2LP1 ARHGEF4 RAB6C-AS1
nsv523500 Chr.2:130835472 - 130853759 on Build GRCh38 Loss ARHGEF4 POTEI
nsv428403 Chr.2:129818076 - 130882067 on Build GRCh38 Loss POTEJ TUBA3E MED15P9 POTEI LOC101927924 LOC107985778 LOC646743 PTPN18 CYP4F62P TISP43 CCDC74B POTEF FAR2P1 LOC389033 FAR2P2 RAB6C CFC1B MZT2B CFC1 AMER3 CCDC115 SMPD4 CYP4F30P IMP4 NOC2LP1 ARHGEF4 GPR148 RAB6C-AS1

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More Information


Additional Information:

For this assay, SNP(s) [rs114857079,rs201960150] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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