Hs04255723_cn

• Gene Symbol: APOD
• Assay Reference Genome Location: Chr.3:195578892 on build GRCh38
• Cytoband: 3q29

Target Gene Details

• Entrez Gene ID: 347
• Gene Name: apolipoprotein D
• Gene Aliases: -
• Location: Chr.3:195568702-195584205 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOD	NM_001647.3			NP_001638.1
	AK294523.1
	AK312090.1
	BC007402.2			AAH07402.1
	BQ008672.1
	BT019860.1			AAV38663.1
	BT019861.1			AAV38664.1
	BU195270.1
	CR456838.1			CAG33119.1
	CR541773.1			CAG46572.1
	DA892855.1
	J02611.1			AAB59517.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1001387	Chr.3:195465410 - 195934667 on Build GRCh38	Gain	MUC4 LOC105374297 MIR570 LINC00969 APOD SDHAP2 MIR6829 TNK2 LOC105374299 LOC101929697 PPP1R2 MUC20
dgv5016n100	Chr.3:195552380 - 195720039 on Build GRCh38	Gain+Loss	LOC105374297 MIR570 LINC00969 APOD SDHAP2
nsv1006229	Chr.3:195350692 - 195747880 on Build GRCh38	Gain	MUC4 LOC105374297 MIR570 LINC00969 APOD SDHAP2 ACAP2 PPP1R2 MUC20
dgv5015n100	Chr.3:195532487 - 195751823 on Build GRCh38	Loss	MUC4 LOC105374297 MIR570 LINC00969 APOD SDHAP2 PPP1R2 MUC20
nsv428430	Chr.3:195478549 - 196102555 on Build GRCh38	Gain+Loss	TFRC MUC4 LOC105374297 MIR570 MIR6829 LOC105374301 MUC20 LINC00969 APOD SDHAP2 TNK2 LOC105374299 LOC101929697 PPP1R2 SDHAP1
esv2763776	Chr.3:195514028 - 195775248 on Build GRCh38	Gain+Loss	MUC4 LOC105374297 MIR570 LINC00969 APOD SDHAP2 PPP1R2 MUC20
dgv5014n100	Chr.3:195514016 - 195747880 on Build GRCh38	Gain	MUC4 LOC105374297 MIR570 LINC00969 APOD SDHAP2 PPP1R2 MUC20
esv2759213	Chr.3:195382058 - 196344722 on Build GRCh38	Gain+Loss	TFRC MUC4 LOC105374297 MIR570 TCTEX1D2 MIR6829 ACAP2 LOC105374301 TM4SF19-AS1 ZDHHC19 MUC20 LINC00885 SLC51A LINC00969 APOD SDHAP2 PCYT1A TNK2 LOC105374299 LOC101929697 TM4SF19 PPP1R2 TM4SF19-TCTEX1D2 SDHAP1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

response to reactive oxygen species
angiogenesis
glucose metabolic process
lipid metabolic process
lipid transport
brain development
aging
negative regulation of platelet-derived growth factor receptor signaling pathway
peripheral nervous system axon regeneration
tissue regeneration
negative regulation of protein import into nucleus
response to drug
negative regulation of smooth muscle cell proliferation
response to axon injury
negative regulation of focal adhesion assembly
negative regulation of lipoprotein lipid oxidation
negative regulation of monocyte chemotactic protein-1 production
negative regulation of cytokine production involved in inflammatory response
negative regulation of smooth muscle cell-matrix adhesion
negative regulation of T cell migration

Function(s)

lipid transporter activity
protein binding
cholesterol binding