Hs04261573_cn

• Gene Symbol: APOD
• Assay Reference Genome Location: Chr.3:195572952 on build GRCh38
• Cytoband: 3q29

Target Gene Details

• Entrez Gene ID: 347
• Gene Name: apolipoprotein D
• Gene Aliases: -
• Location: Chr.3:195568702-195584205 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOD	NM_001647.3			NP_001638.1
	AK294523.1
	AK312090.1
	BC007402.2			AAH07402.1
	BQ008672.1
	BT019860.1			AAV38663.1
	BT019861.1			AAV38664.1
	BU195270.1
	CR456838.1			CAG33119.1
	CR541773.1			CAG46572.1
	DA892855.1
	J02611.1			AAB59517.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv5016n100	Chr.3:195552380 - 195720039 on Build GRCh38	Gain+Loss	MIR570 LOC105374297 LINC00969 APOD SDHAP2
nsv1001387	Chr.3:195465410 - 195934667 on Build GRCh38	Gain	MUC20 MIR570 LOC105374299 PPP1R2 MUC4 LOC101929697 LOC105374297 LINC00969 APOD TNK2 MIR6829 SDHAP2
dgv5015n100	Chr.3:195532487 - 195751823 on Build GRCh38	Loss	MUC20 MIR570 PPP1R2 MUC4 LOC105374297 LINC00969 APOD SDHAP2
nsv1006229	Chr.3:195350692 - 195747880 on Build GRCh38	Gain	MUC20 MIR570 PPP1R2 MUC4 LOC105374297 LINC00969 ACAP2 APOD SDHAP2
nsv428430	Chr.3:195478549 - 196102555 on Build GRCh38	Gain+Loss	SDHAP1 MIR570 LOC105374299 PPP1R2 LOC101929697 APOD LOC105374301 SDHAP2 MUC20 MUC4 LOC105374297 LINC00969 TNK2 MIR6829 TFRC
esv2763776	Chr.3:195514028 - 195775248 on Build GRCh38	Gain+Loss	MUC20 MIR570 PPP1R2 MUC4 LOC105374297 LINC00969 APOD SDHAP2
dgv5014n100	Chr.3:195514016 - 195747880 on Build GRCh38	Gain	MUC20 MIR570 PPP1R2 MUC4 LOC105374297 LINC00969 APOD SDHAP2
esv2759213	Chr.3:195382058 - 196344722 on Build GRCh38	Gain+Loss	SDHAP1 TM4SF19-TCTEX1D2 MIR570 TCTEX1D2 LOC105374299 PCYT1A PPP1R2 LOC101929697 LINC00885 APOD ZDHHC19 LOC105374301 SDHAP2 MUC20 SLC51A MUC4 TM4SF19 LOC105374297 TM4SF19-AS1 LINC00969 ACAP2 TNK2 MIR6829 TFRC

More Information

Additional Information:

For this assay, SNP(s) [rs112090590] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

response to reactive oxygen species
angiogenesis
glucose metabolic process
lipid metabolic process
lipid transport
brain development
aging
negative regulation of platelet-derived growth factor receptor signaling pathway
peripheral nervous system axon regeneration
tissue regeneration
negative regulation of protein import into nucleus
response to drug
negative regulation of smooth muscle cell proliferation
response to axon injury
negative regulation of focal adhesion assembly
negative regulation of lipoprotein lipid oxidation
negative regulation of monocyte chemotactic protein-1 production
negative regulation of cytokine production involved in inflammatory response
negative regulation of smooth muscle cell-matrix adhesion
negative regulation of T cell migration

Function(s)

lipid transporter activity
protein binding
cholesterol binding