Hs04342604_cn

• Gene Symbol: TCAF1
• Assay Reference Genome Location: Chr.7:143881024 on build GRCh38
• Cytoband: 7q35

Target Gene Details

• Entrez Gene ID: 9747
• Gene Name: TRPM8 channel associated factor 1
• Gene Aliases: FAM115A
• Location: Chr.7:143851368-143902228 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCAF1	NM_001206938.1			NP_001193867.1
	NM_001206941.1			NP_001193870.1
	NM_014719.2			NP_055534.1
	XM_005250074.3			XP_005250131.1
	XM_005250075.2			XP_005250132.1
	XM_005250076.3			XP_005250133.1
	XM_005250077.2			XP_005250134.1
	XM_006716191.2			XP_006716254.1
	XM_006716192.3			XP_006716255.1
	XM_017012833.1			XP_016868322.1
	XM_017012834.1			XP_016868323.1
	XM_017012835.1			XP_016868324.1
	XM_017012836.1			XP_016868325.1
	AB018281.1
	AK001640.1
	AK291605.1
	AK299911.1
	BC000609.2			AAH00609.1
	DA196926.1
	DA317873.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471645	Chr.7:143741167 - 143958691 on Build GRCh38	Gain+Loss	CTAGE6 OR2F1 TCAF2P1 TCAF1 OR2F2 LOC154761
nsv428188	Chr.7:143450682 - 144500577 on Build GRCh38	Gain+Loss	OR2A9P TCAF2 OR2A20P OR2A7 OR2F1 TCAF2P1 LOC101928605 NOBOX LOC101928422 LOC154761 TPK1 OR2A25 TAS2R41 OR2A12 OR2A2 OR2A42 CTAGE6 CTAGE15 OR2A1-AS1 OR2A5 ARHGEF5 ARHGEF34P OR2A14 TCAF1 OR6B1 OR2A1 CTAGE8 ARHGEF35 OR2F2 CTAGE4 EPHA1-AS1
nsv469570	Chr.7:143741166 - 143958691 on Build GRCh38	Gain+Loss	CTAGE6 OR2F1 TCAF2P1 TCAF1 OR2F2 LOC154761
dgv6725n100	Chr.7:143870954 - 144214519 on Build GRCh38	Gain	OR6B1 OR2A5 OR2A25 OR2F1 LOC101928605 OR2A12 ARHGEF35 OR2A14 TCAF1 OR2F2 CTAGE4 OR2A2
dgv6718n100	Chr.7:143751274 - 143881082 on Build GRCh38	Gain	CTAGE6 TCAF2P1 TCAF1 LOC154761
esv3891223	Chr.7:143878890 - 144177097 on Build GRCh38	Loss	OR6B1 OR2A5 OR2A25 OR2F1 OR2A12 OR2A14 TCAF1 OR2F2 OR2A2
nsv608682	Chr.7:143444382 - 144177097 on Build GRCh38	Gain	CTAGE6 CTAGE15 OR2A5 TCAF2 OR2F1 TCAF2P1 OR2A14 TCAF1 LOC101928422 LOC154761 OR6B1 OR2A25 TAS2R41 TAS2R60 OR2A12 OR2F2 EPHA1-AS1 OR2A2
dgv6700n100	Chr.7:143512758 - 143881082 on Build GRCh38	Gain	CTAGE6 CTAGE15 TCAF2 TCAF2P1 TCAF1 EPHA1-AS1 LOC101928422 LOC154761
dgv6717n100	Chr.7:143747111 - 143881082 on Build GRCh38	Gain+Loss	CTAGE6 TCAF2P1 TCAF1 LOC154761
dgv11664n54	Chr.7:143848626 - 144177097 on Build GRCh38	Gain	OR6B1 OR2A5 OR2A25 OR2F1 OR2A12 OR2A14 TCAF1 OR2F2 OR2A2
esv2422489	Chr.7:143510941 - 144038942 on Build GRCh38	Duplication	CTAGE6 CTAGE15 OR6B1 TCAF2 OR2F1 TCAF2P1 TCAF1 OR2F2 EPHA1-AS1 LOC101928422 LOC154761
nsv522225	Chr.7:143728285 - 144177097 on Build GRCh38	Gain	CTAGE6 OR2A5 TCAF2 OR2F1 TCAF2P1 OR2A14 TCAF1 LOC154761 OR6B1 OR2A25 OR2A12 OR2F2 OR2A2
dgv6724n100	Chr.7:143846746 - 143913658 on Build GRCh38	Loss	OR2F1 TCAF1
esv2752147	Chr.7:143875193 - 144169439 on Build GRCh38	Gain	OR6B1 OR2A5 OR2A25 OR2F1 OR2A12 OR2A14 TCAF1 OR2F2 OR2A2
dgv6712n100	Chr.7:143733483 - 143897882 on Build GRCh38	Loss	CTAGE6 TCAF2P1 TCAF1 LOC154761
nsv8227	Chr.7:143519748 - 144378447 on Build GRCh38	Gain+Loss	OR2A9P TCAF2 OR2A20P OR2A7 OR2F1 TCAF2P1 LOC101928605 LOC101928422 LOC154761 OR2A25 OR2A12 OR2A2 OR2A42 CTAGE6 CTAGE15 OR2A1-AS1 OR2A5 ARHGEF5 ARHGEF34P OR2A14 TCAF1 OR6B1 OR2A1 CTAGE8 ARHGEF35 OR2F2 CTAGE4 EPHA1-AS1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transport
negative regulation of cell migration
positive regulation of protein targeting to membrane
positive regulation of anion channel activity

Function(s)

protein binding
ion channel binding