Hs04358814_cn

• Gene Symbol: AGPAT5
• Assay Reference Genome Location: Chr.8:6741992 on build GRCh38
• Cytoband: 8p23.1

Target Gene Details

• Entrez Gene ID: 55326
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 5
• Gene Aliases: 1AGPAT5, LPAATE
• Location: Chr.8:6708357-6761503 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT5	NM_018361.3			NP_060831.2
	XM_011534751.2			XP_011533053.1
	AF375789.1			AAK54809.1
	AK002072.1			BAA92069.1
	AK310545.1
	AL136587.1			CAB66522.1
	BC023550.2			AAH23550.1
	BC068519.1			AAH68519.1
	BC080537.1			AAH80537.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1021684	Chr.8:6492570 - 6951933 on Build GRCh38	Loss	DEFA4 MIR4659A MCPH1-AS1 MIR4659B DEFA8P MIR8055 ANGPT2 DEFB1 MCPH1 XKR5 GS1-24F4.2 AGPAT5 DEFA6
nsv610004	Chr.8:6544845 - 6915391 on Build GRCh38	Gain	MIR8055 ANGPT2 MIR4659A DEFB1 MCPH1 XKR5 MCPH1-AS1 MIR4659B GS1-24F4.2 AGPAT5
nsv1025976	Chr.8:6615427 - 6829450 on Build GRCh38	Loss	MIR8055 MIR4659A MCPH1 XKR5 MCPH1-AS1 MIR4659B AGPAT5
esv2422383	Chr.8:6504868 - 6924071 on Build GRCh38	Duplication	MIR8055 ANGPT2 MIR4659A DEFB1 MCPH1 XKR5 MCPH1-AS1 MIR4659B GS1-24F4.2 AGPAT5
nsv831220	Chr.8:6670324 - 6870969 on Build GRCh38	Gain	MIR4659A DEFB1 XKR5 MCPH1-AS1 MIR4659B GS1-24F4.2 AGPAT5
nsv465436	Chr.8:6710680 - 7063882 on Build GRCh38	Gain	DEFT1P2 DEFA4 DEFT1P MIR4659A DEFA7P MIR4659B DEFA8P DEFA3 DEFA5 DEFA11P DEFA1B DEFA9P DEFB1 DEFA1 XKR5 GS1-24F4.2 AGPAT5 DEFA10P DEFA6
dgv6877n100	Chr.8:6712833 - 6765164 on Build GRCh38	Gain	MIR4659A MIR4659B AGPAT5
dgv6876n100	Chr.8:6687977 - 6812428 on Build GRCh38	Loss	MIR4659A XKR5 MCPH1-AS1 MIR4659B AGPAT5

More Information

Additional Information:

For this assay, SNP(s) [rs79061906] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

hematopoietic progenitor cell differentiation
phosphatidic acid biosynthetic process
phospholipid biosynthetic process
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity
protein binding