Hs04370106_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136681229 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	MIR126 HSPC324 EGFL7 LINC01451 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4673 MIR126 FAM69B NOTCH1 HSPC324 NALT1 EGFL7 LINC01451 MIR4674 AGPAT2 SNHG7
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	MIR126 FAM69B LCN15 HSPC324 LCN8 SNORA17A LCN10 AGPAT2 LCN6 LOC100128593 EGFL7 SNORA17B MIR6722 LINC01451 SNHG7
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR126 FAM69B SDCCAG3 RABL6 LCN8 MIR4292 EDF1 LCN10 MIR4674 PHPT1 CCDC183-AS1 MIR4673 INPP5E TMEM141 DNLZ C9orf172 NOTCH1 LCN6 NALT1 EGFL7 CCDC183 C9orf163 LCN15 HSPC324 MAMDC4 SNORA17A SEC16A SNAPC4 AGPAT2 TRAF2 GPSM1 CARD9 LOC100128593 MIR4479 SNORA17B MIR6722 PMPCA LINC01451 SNHG7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAN1B1-AS1 MIR126 TMEM210 PRR31 NPDC1 RABL6 LCN8 LCN10 MAN1B1 MIR4674 CCDC183-AS1 C9orf142 C9orf172 NOTCH1 FBXW5 LCN6 NALT1 CCDC183 ENTPD2 C9orf139 C9orf163 LCNL1 GRIN1 UAP1L1 SNAPC4 PTGDS CARD9 LOC100128593 MIR4479 LRRC26 SNORA17B PMPCA FAM69B SDCCAG3 DPP7 MIR4292 EDF1 PHPT1 MIR4673 FUT7 INPP5E TMEM141 DNLZ ABCA2 EGFL7 MIR3621 CLIC3 SAPCD2 LCN15 HSPC324 MAMDC4 SNORA17A SEC16A LCN12 AGPAT2 TRAF2 C8G MIR6722 LINC01451 SNHG7 LOC101930307
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR126 FAM69B LCN15 HSPC324 LCN8 SNORA17A LCN10 MIR4674 AGPAT2 MIR4673 NOTCH1 LCN6 LOC100128593 NALT1 EGFL7 SNORA17B MIR6722 LINC01451 SNHG7
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	MIR126 FAM69B HSPC324 EGFL7 LINC01451 AGPAT2
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	MIR126 FAM69B HSPC324 EGFL7 AGPAT2 SNHG7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TMEM203 MAN1B1-AS1 MIR126 TMEM210 PRR31 TUBB4B NPDC1 RABL6 LCN8 RNF224 LCN10 RNF208 MAN1B1 C9orf173-AS1 CCDC183-AS1 FAM166A C9orf142 C9orf172 FBXW5 LCN6 CCDC183 ENTPD2 C9orf139 LCNL1 GRIN1 UAP1L1 EXD3 PTGDS LOC100128593 MIR4479 LRRC26 SNORA17B FAM69B ANAPC2 DPP7 MIR4292 EDF1 PHPT1 FUT7 TMEM141 SSNA1 ABCA2 EGFL7 MIR3621 CLIC3 TOR4A SAPCD2 TPRN STPG3 LCN15 HSPC324 MAMDC4 NELFB SNORA17A NRARP LCN12 NDOR1 AGPAT2 TRAF2 SLC34A3 CYSRT1 C8G MIR6722 LINC01451 SNHG7 LOC101930307

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity